Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sox9Q04887 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm7224-201ENSMUST00000121359 2066 ntBASIC11.69□□□□□ -0.54
Sox9Q04887 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC11.69□□□□□ -0.54
Sox9Q04887 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm20831-201ENSMUST00000177639 1337 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Ssty1-202ENSMUST00000186035 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm20737-202ENSMUST00000187245 1338 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm20777-202ENSMUST00000187434 1341 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm20873-202ENSMUST00000187857 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm20772-201ENSMUST00000188928 1343 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm21310-202ENSMUST00000189630 1343 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm20795-202ENSMUST00000190909 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm21454-202ENSMUST00000192204 1343 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm21440-201ENSMUST00000192749 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm20831-202ENSMUST00000194411 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm20807-201ENSMUST00000194687 1336 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm21425-202ENSMUST00000195626 1345 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC11.69□□□□□ -0.54
Sox9Q04887 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm10842-201ENSMUST00000100338 369 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Sox9Q04887 2300003K06Rik-201ENSMUST00000105054 1265 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm13426-201ENSMUST00000117887 795 ntBASIC11.69□□□□□ -0.54
Sox9Q04887 Gm12684-201ENSMUST00000118675 999 ntBASIC11.69□□□□□ -0.54
Sox9Q04887 Gsta3-202ENSMUST00000121676 894 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm6471-202ENSMUST00000148734 587 ntTSL 2 BASIC11.69□□□□□ -0.54
Sox9Q04887 AU015836-205ENSMUST00000163458 911 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm17782-201ENSMUST00000174345 880 ntBASIC11.69□□□□□ -0.54
Sox9Q04887 Gm5210-201ENSMUST00000182150 1010 ntBASIC11.69□□□□□ -0.54
Sox9Q04887 Gm38233-201ENSMUST00000194259 807 ntBASIC11.69□□□□□ -0.54
Sox9Q04887 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Sox9Q04887 Chac2-201ENSMUST00000020553 1018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Mylpf-206ENSMUST00000206772 653 ntTSL 3 BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm9644-201ENSMUST00000212828 1183 ntBASIC11.69□□□□□ -0.54
Sox9Q04887 Ngp-201ENSMUST00000035061 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Eif4ebp3-201ENSMUST00000036765 744 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Olfr1394-201ENSMUST00000052668 939 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Sox9Q04887 Nt5dc1-202ENSMUST00000099973 761 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Gm43051-201ENSMUST00000201096 2678 ntBASIC11.69□□□□□ -0.54
Sox9Q04887 Brcc3-203ENSMUST00000118428 2093 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC11.69□□□□□ -0.54
Sox9Q04887 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Sox9Q04887 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Sox9Q04887 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
Sox9Q04887 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Sox9Q04887 Gm5740-201ENSMUST00000211003 1857 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Sox9Q04887 Pfn1-202ENSMUST00000108549 608 ntTSL 2 BASIC11.68□□□□□ -0.54
Sox9Q04887 Gm11736-201ENSMUST00000121468 505 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 Gm24140-201ENSMUST00000122773 326 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 Gm12946-201ENSMUST00000122969 519 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 Gm12606-202ENSMUST00000129527 1184 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 Gstt3-203ENSMUST00000173537 687 ntTSL 3 BASIC11.68□□□□□ -0.54
Sox9Q04887 Gm18733-202ENSMUST00000174447 401 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 Gm5808-201ENSMUST00000178090 357 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 n-R5s130-201ENSMUST00000178128 119 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 Gm24312-201ENSMUST00000178677 119 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 n-R5s106-201ENSMUST00000179060 119 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 n-R5s118-201ENSMUST00000179887 119 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 Gm6216-201ENSMUST00000182390 687 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 Gm37723-201ENSMUST00000194480 565 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 Ckb-ps2-201ENSMUST00000198886 1001 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 4930447C11Rik-201ENSMUST00000204503 928 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 Nqo2-203ENSMUST00000220844 957 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 Nsmce2-203ENSMUST00000227173 1122 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 Tmsb15b2-201ENSMUST00000069803 450 ntTSL 2 BASIC11.68□□□□□ -0.54
Sox9Q04887 Pgk1-rs7-201ENSMUST00000085735 1255 ntBASIC11.68□□□□□ -0.54
Sox9Q04887 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
Sox9Q04887 Nutf2-ps1-201ENSMUST00000095978 864 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Sox9Q04887 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
Sox9Q04887 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC11.68□□□□□ -0.54
Sox9Q04887 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms