Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Sox3P53784 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Sox3P53784 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Sox3P53784 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Sox3P53784 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC10.84□□□□□ -0.67
Sox3P53784 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Sox3P53784 Gm12453-201ENSMUST00000121981 331 ntBASIC10.84□□□□□ -0.67
Sox3P53784 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC10.84□□□□□ -0.67
Sox3P53784 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC10.84□□□□□ -0.67
Sox3P53784 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC10.84□□□□□ -0.67
Sox3P53784 Gm24844-201ENSMUST00000158679 127 ntBASIC10.84□□□□□ -0.67
Sox3P53784 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC10.84□□□□□ -0.67
Sox3P53784 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Gm42511-201ENSMUST00000196160 234 ntBASIC10.84□□□□□ -0.67
Sox3P53784 Gm5714-201ENSMUST00000197343 566 ntBASIC10.84□□□□□ -0.67
Sox3P53784 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC10.84□□□□□ -0.67
Sox3P53784 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Gm3726-201ENSMUST00000203110 785 ntBASIC10.84□□□□□ -0.67
Sox3P53784 Gm29763-201ENSMUST00000205306 616 ntBASIC10.84□□□□□ -0.67
Sox3P53784 Gm44506-201ENSMUST00000206278 965 ntBASIC10.84□□□□□ -0.67
Sox3P53784 Gm45135-201ENSMUST00000206787 1184 ntBASIC10.84□□□□□ -0.67
Sox3P53784 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC10.84□□□□□ -0.67
Sox3P53784 Gm18514-201ENSMUST00000218980 436 ntBASIC10.84□□□□□ -0.67
Sox3P53784 CT030135.2-201ENSMUST00000225255 893 ntBASIC10.84□□□□□ -0.67
Sox3P53784 AC158388.3-202ENSMUST00000225517 775 ntBASIC10.84□□□□□ -0.67
Sox3P53784 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC10.84□□□□□ -0.67
Sox3P53784 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
Sox3P53784 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC10.84□□□□□ -0.67
Sox3P53784 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC10.84□□□□□ -0.67
Sox3P53784 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Gm43622-201ENSMUST00000200140 2019 ntBASIC10.84□□□□□ -0.67
Sox3P53784 Gm18262-201ENSMUST00000222560 1946 ntBASIC10.84□□□□□ -0.67
Sox3P53784 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Sox3P53784 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Sox3P53784 Galr1-201ENSMUST00000065224 2871 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC10.83□□□□□ -0.68
Sox3P53784 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Sox3P53784 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC10.83□□□□□ -0.68
Sox3P53784 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC10.83□□□□□ -0.68
Sox3P53784 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC10.83□□□□□ -0.68
Sox3P53784 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC10.83□□□□□ -0.68
Sox3P53784 Gm24248-201ENSMUST00000157321 322 ntBASIC10.83□□□□□ -0.68
Sox3P53784 Gm17214-201ENSMUST00000164501 541 ntBASIC10.83□□□□□ -0.68
Sox3P53784 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Sox3P53784 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Sox3P53784 Gm19587-201ENSMUST00000191395 545 ntBASIC10.83□□□□□ -0.68
Sox3P53784 Gm9136-201ENSMUST00000193368 454 ntBASIC10.83□□□□□ -0.68
Sox3P53784 Gm5870-201ENSMUST00000196461 282 ntBASIC10.83□□□□□ -0.68
Sox3P53784 Gm45758-201ENSMUST00000212448 1006 ntBASIC10.83□□□□□ -0.68
Sox3P53784 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC10.83□□□□□ -0.68
Sox3P53784 AC121960.1-201ENSMUST00000227982 564 ntBASIC10.83□□□□□ -0.68
Sox3P53784 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC10.83□□□□□ -0.68
Sox3P53784 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
Sox3P53784 Gm9544-201ENSMUST00000223349 2482 ntBASIC10.83□□□□□ -0.68
Sox3P53784 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC10.83□□□□□ -0.68
Sox3P53784 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC10.83□□□□□ -0.68
Sox3P53784 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC10.83□□□□□ -0.68
Sox3P53784 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC10.83□□□□□ -0.68
Sox3P53784 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC10.83□□□□□ -0.68
Sox3P53784 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Sox3P53784 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms