Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
Shmt1P50431 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Gm21759-201ENSMUST00000178345 1828 ntBASIC11.89□□□□□ -0.51
Shmt1P50431 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Gm15197-201ENSMUST00000120526 478 ntBASIC11.89□□□□□ -0.51
Shmt1P50431 Gm13284-201ENSMUST00000121020 547 ntBASIC11.89□□□□□ -0.51
Shmt1P50431 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC11.89□□□□□ -0.51
Shmt1P50431 Gm22442-201ENSMUST00000157256 144 ntBASIC11.89□□□□□ -0.51
Shmt1P50431 Gm16938-201ENSMUST00000180517 464 ntTSL 5 BASIC11.89□□□□□ -0.51
Shmt1P50431 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Gm3017-201ENSMUST00000203603 1126 ntBASIC11.89□□□□□ -0.51
Shmt1P50431 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC11.89□□□□□ -0.51
Shmt1P50431 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC11.89□□□□□ -0.51
Shmt1P50431 Gm4811-201ENSMUST00000220879 1220 ntBASIC11.89□□□□□ -0.51
Shmt1P50431 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC11.89□□□□□ -0.51
Shmt1P50431 CT009527.1-201ENSMUST00000224205 339 ntBASIC11.89□□□□□ -0.51
Shmt1P50431 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
Shmt1P50431 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Shmt1P50431 Cenpu-202ENSMUST00000093518 783 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Shmt1P50431 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Shmt1P50431 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Gm18294-201ENSMUST00000176980 1748 ntBASIC11.89□□□□□ -0.51
Shmt1P50431 Zw10-201ENSMUST00000034803 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Shmt1P50431 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC11.88□□□□□ -0.51
Shmt1P50431 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Shmt1P50431 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC11.88□□□□□ -0.51
Shmt1P50431 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Shmt1P50431 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Gm13668-201ENSMUST00000119237 1001 ntBASIC11.88□□□□□ -0.51
Shmt1P50431 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC11.88□□□□□ -0.51
Shmt1P50431 Gm25343-201ENSMUST00000157460 107 ntBASIC11.88□□□□□ -0.51
Shmt1P50431 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC11.88□□□□□ -0.51
Shmt1P50431 Rn7s6-201ENSMUST00000175005 291 ntBASIC11.88□□□□□ -0.51
Shmt1P50431 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Gm26134-201ENSMUST00000178484 110 ntBASIC11.88□□□□□ -0.51
Shmt1P50431 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Shmt1P50431 Gm19166-201ENSMUST00000196041 1063 ntBASIC11.88□□□□□ -0.51
Shmt1P50431 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC11.88□□□□□ -0.51
Shmt1P50431 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC11.88□□□□□ -0.51
Shmt1P50431 AC165154.1-201ENSMUST00000226661 340 ntBASIC11.88□□□□□ -0.51
Shmt1P50431 AC122035.1-201ENSMUST00000227576 1016 ntBASIC11.88□□□□□ -0.51
Shmt1P50431 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Shmt1P50431 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Gm5822-201ENSMUST00000161562 1378 ntBASIC11.88□□□□□ -0.51
Shmt1P50431 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC11.88□□□□□ -0.51
Shmt1P50431 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Shmt1P50431 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Shmt1P50431 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Shmt1P50431 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Shmt1P50431 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Shmt1P50431 Gm6831-202ENSMUST00000213025 1673 ntBASIC11.87□□□□□ -0.51
Shmt1P50431 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Shmt1P50431 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Shmt1P50431 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Shmt1P50431 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
Shmt1P50431 Gm3765-201ENSMUST00000130985 1447 ntBASIC11.87□□□□□ -0.51
Shmt1P50431 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Shmt1P50431 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Shmt1P50431 Wwp2-204ENSMUST00000212205 2758 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Shmt1P50431 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Shmt1P50431 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Shmt1P50431 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Shmt1P50431 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Shmt1P50431 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC11.87□□□□□ -0.51
Shmt1P50431 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms