Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm6903-201ENSMUST00000160509 1366 ntBASIC12.18□□□□□ -0.46
RaraP11416 Gm26660-202ENSMUST00000223620 4112 ntBASIC12.18□□□□□ -0.46
RaraP11416 Zfp280b-201ENSMUST00000061617 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Katnal2-205ENSMUST00000126153 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Mdm1-201ENSMUST00000020437 3074 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Mcf2l-202ENSMUST00000098927 3215 ntTSL 5 BASIC12.17□□□□□ -0.46
RaraP11416 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
RaraP11416 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
RaraP11416 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
RaraP11416 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
RaraP11416 Sema4d-201ENSMUST00000021900 4482 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC12.17□□□□□ -0.46
RaraP11416 Eif4g2-206ENSMUST00000161051 3548 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
RaraP11416 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
RaraP11416 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Gm31938-201ENSMUST00000218081 1818 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Gm24891-201ENSMUST00000104391 136 ntBASIC12.17□□□□□ -0.46
RaraP11416 Gm14740-201ENSMUST00000118538 1150 ntBASIC12.17□□□□□ -0.46
RaraP11416 Gm15566-201ENSMUST00000121130 590 ntBASIC12.17□□□□□ -0.46
RaraP11416 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
RaraP11416 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Gm24844-201ENSMUST00000158679 127 ntBASIC12.17□□□□□ -0.46
RaraP11416 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC12.17□□□□□ -0.46
RaraP11416 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC12.17□□□□□ -0.46
RaraP11416 Gm17040-202ENSMUST00000170597 889 ntBASIC12.17□□□□□ -0.46
RaraP11416 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC12.17□□□□□ -0.46
RaraP11416 Gm22119-201ENSMUST00000175594 99 ntBASIC12.17□□□□□ -0.46
RaraP11416 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC12.17□□□□□ -0.46
RaraP11416 Gm12407-201ENSMUST00000180219 324 ntBASIC12.17□□□□□ -0.46
RaraP11416 Mrip-ps-201ENSMUST00000184613 940 ntBASIC12.17□□□□□ -0.46
RaraP11416 Gm4857-201ENSMUST00000192718 785 ntBASIC12.17□□□□□ -0.46
RaraP11416 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC12.17□□□□□ -0.46
RaraP11416 Gstp-ps-201ENSMUST00000195526 631 ntBASIC12.17□□□□□ -0.46
RaraP11416 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 AC124742.1-201ENSMUST00000219909 547 ntTSL 3 BASIC12.17□□□□□ -0.46
RaraP11416 AC166344.1-201ENSMUST00000223745 674 ntBASIC12.17□□□□□ -0.46
RaraP11416 AC154171.1-201ENSMUST00000224610 643 ntBASIC12.17□□□□□ -0.46
RaraP11416 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
RaraP11416 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC12.17□□□□□ -0.46
RaraP11416 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
RaraP11416 Gm44153-201ENSMUST00000204162 1580 ntBASIC12.17□□□□□ -0.46
RaraP11416 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Azin1-203ENSMUST00000110329 4217 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
RaraP11416 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 4930517G19Rik-201ENSMUST00000206152 1676 ntBASIC12.16□□□□□ -0.46
RaraP11416 Gm42141-201ENSMUST00000196534 2172 ntBASIC12.16□□□□□ -0.46
RaraP11416 Il27ra-201ENSMUST00000005601 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
RaraP11416 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Cfap54-201ENSMUST00000020200 2473 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
RaraP11416 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC12.16□□□□□ -0.46
RaraP11416 Sod3-201ENSMUST00000101208 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Phc1-204ENSMUST00000159252 3744 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
RaraP11416 AC207128.2-201ENSMUST00000223708 1924 ntBASIC12.16□□□□□ -0.46
RaraP11416 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC12.16□□□□□ -0.46
RaraP11416 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC12.16□□□□□ -0.46
RaraP11416 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Gm7851-201ENSMUST00000117574 323 ntBASIC12.16□□□□□ -0.46
RaraP11416 Gm12266-201ENSMUST00000120311 962 ntBASIC12.16□□□□□ -0.46
RaraP11416 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC12.16□□□□□ -0.46
RaraP11416 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC12.16□□□□□ -0.46
RaraP11416 Vmn1r-ps10-201ENSMUST00000176165 889 ntBASIC12.16□□□□□ -0.46
RaraP11416 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Gm29499-201ENSMUST00000189151 486 ntBASIC12.16□□□□□ -0.46
RaraP11416 Gm28329-201ENSMUST00000191208 689 ntBASIC12.16□□□□□ -0.46
RaraP11416 Gm29171-201ENSMUST00000191397 486 ntBASIC12.16□□□□□ -0.46
RaraP11416 AU022133-201ENSMUST00000200601 873 ntBASIC12.16□□□□□ -0.46
RaraP11416 Gm8342-201ENSMUST00000209839 757 ntBASIC12.16□□□□□ -0.46
RaraP11416 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC12.16□□□□□ -0.46
RaraP11416 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC12.16□□□□□ -0.46
RaraP11416 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC12.16□□□□□ -0.46
RaraP11416 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Gm38187-201ENSMUST00000195609 4709 ntBASIC12.16□□□□□ -0.46
RaraP11416 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
RaraP11416 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
RaraP11416 CT025681.1-201ENSMUST00000225453 1855 ntBASIC12.16□□□□□ -0.46
RaraP11416 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Slc25a25-202ENSMUST00000052119 3529 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Ces3b-202ENSMUST00000093221 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
RaraP11416 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
RaraP11416 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
RaraP11416 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
RaraP11416 Nf2-202ENSMUST00000056290 2394 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms