Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC11.02□□□□□ -0.65
Chd3B1AR17 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Chd3B1AR17 Zfp286-202ENSMUST00000108705 1979 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Gm7964-201ENSMUST00000051522 1378 ntBASIC11.02□□□□□ -0.65
Chd3B1AR17 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC11.02□□□□□ -0.65
Chd3B1AR17 Anxa8-202ENSMUST00000120077 1208 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC11.02□□□□□ -0.65
Chd3B1AR17 Gm22146-201ENSMUST00000157397 288 ntBASIC11.02□□□□□ -0.65
Chd3B1AR17 Gm5700-201ENSMUST00000191483 989 ntBASIC11.02□□□□□ -0.65
Chd3B1AR17 Gm9369-201ENSMUST00000196009 733 ntBASIC11.02□□□□□ -0.65
Chd3B1AR17 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC11.02□□□□□ -0.65
Chd3B1AR17 Gm26670-202ENSMUST00000226862 340 ntBASIC11.02□□□□□ -0.65
Chd3B1AR17 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Gm15784-201ENSMUST00000120260 1462 ntBASIC11.02□□□□□ -0.65
Chd3B1AR17 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Chd3B1AR17 Smok4a-201ENSMUST00000074512 1455 ntBASIC11.02□□□□□ -0.65
Chd3B1AR17 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Chd3B1AR17 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC11.01□□□□□ -0.65
Chd3B1AR17 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC11.01□□□□□ -0.65
Chd3B1AR17 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC11.01□□□□□ -0.65
Chd3B1AR17 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Mir453-201ENSMUST00000104732 82 ntBASIC11.01□□□□□ -0.65
Chd3B1AR17 Snord23-201ENSMUST00000116828 109 ntBASIC11.01□□□□□ -0.65
Chd3B1AR17 Gm11980-201ENSMUST00000121445 986 ntBASIC11.01□□□□□ -0.65
Chd3B1AR17 Pet100-201ENSMUST00000156380 1193 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Gm43275-201ENSMUST00000202053 1020 ntBASIC11.01□□□□□ -0.65
Chd3B1AR17 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC11.01□□□□□ -0.65
Chd3B1AR17 Gm19091-201ENSMUST00000208120 978 ntBASIC11.01□□□□□ -0.65
Chd3B1AR17 Gm45388-201ENSMUST00000209922 1132 ntTSL 5 BASIC11.01□□□□□ -0.65
Chd3B1AR17 AC122024.3-201ENSMUST00000217719 294 ntBASIC11.01□□□□□ -0.65
Chd3B1AR17 Gm25580-201ENSMUST00000083409 327 ntBASIC11.01□□□□□ -0.65
Chd3B1AR17 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Styx-205ENSMUST00000226873 12974 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Chd3B1AR17 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Gm43152-201ENSMUST00000202495 1638 ntBASIC11.01□□□□□ -0.65
Chd3B1AR17 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Chd3B1AR17 Gm43482-201ENSMUST00000202797 1861 ntBASIC11.01□□□□□ -0.65
Chd3B1AR17 Gm43972-201ENSMUST00000181398 1467 ntBASIC11.01□□□□□ -0.65
Chd3B1AR17 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC11□□□□□ -0.65
Chd3B1AR17 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC11□□□□□ -0.65
Chd3B1AR17 Mir7035-201ENSMUST00000184713 82 ntBASIC11□□□□□ -0.65
Chd3B1AR17 Gm43163-201ENSMUST00000196571 442 ntBASIC11□□□□□ -0.65
Chd3B1AR17 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC11□□□□□ -0.65
Chd3B1AR17 Gm18035-201ENSMUST00000211962 589 ntBASIC11□□□□□ -0.65
Chd3B1AR17 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC11□□□□□ -0.65
Chd3B1AR17 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC11□□□□□ -0.65
Chd3B1AR17 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC11□□□□□ -0.65
Chd3B1AR17 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC11□□□□□ -0.65
Chd3B1AR17 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC11□□□□□ -0.65
Chd3B1AR17 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Dclk2-202ENSMUST00000191752 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC11□□□□□ -0.65
Chd3B1AR17 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC11□□□□□ -0.65
Chd3B1AR17 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Chd3B1AR17 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC11□□□□□ -0.65
Chd3B1AR17 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Chd3B1AR17 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Chd3B1AR17 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Chd3B1AR17 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms