Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Mir7076-201ENSMUST00000183519 74 ntBASIC10.51□□□□□ -0.73
Cdc40Q9DC48 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Gm37299-201ENSMUST00000193951 826 ntBASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Gm38151-201ENSMUST00000195085 289 ntBASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Gm5542-201ENSMUST00000195485 1089 ntBASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Gm34023-201ENSMUST00000195539 217 ntBASIC10.51□□□□□ -0.73
Cdc40Q9DC48 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Gm6108-201ENSMUST00000208365 367 ntBASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Atg16l2-201ENSMUST00000120267 6459 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Capn5-201ENSMUST00000040971 4498 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 4931406P16Rik-202ENSMUST00000108074 6224 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Acsl4-201ENSMUST00000033634 5280 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Tom1l2-203ENSMUST00000093048 4864 ntTSL 5 BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdc40Q9DC48 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 AC166836.1-201ENSMUST00000219933 1795 ntBASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Myo1h-210ENSMUST00000202006 4631 ntAPPRIS P2 TSL 5 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Gm3150-201ENSMUST00000166418 204 ntBASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Mir8115-201ENSMUST00000184992 119 ntBASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Gm44506-201ENSMUST00000206278 965 ntBASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Gm2875-201ENSMUST00000211333 360 ntBASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 AC112945.1-201ENSMUST00000226413 514 ntBASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Gm4978-201ENSMUST00000071565 801 ntBASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Manea-201ENSMUST00000041374 4867 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdc40Q9DC48 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Peg3-201ENSMUST00000051209 8694 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Pcdhb19-201ENSMUST00000059571 7138 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 CT009489.1-201ENSMUST00000227740 1893 ntBASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC10.49□□□□□ -0.73
Cdc40Q9DC48 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms