Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Cd300lg-201ENSMUST00000017453 2353 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Gm37954-201ENSMUST00000195400 2071 ntBASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 AC173482.6-201ENSMUST00000225889 1741 ntBASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Ccdc96-201ENSMUST00000060100 3585 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Gm11660-201ENSMUST00000120955 412 ntBASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Gm15566-201ENSMUST00000121130 590 ntBASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Gm22138-201ENSMUST00000158748 128 ntBASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Mir7076-201ENSMUST00000183519 74 ntBASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Snora73b-201ENSMUST00000083419 205 ntBASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Gm5124-202ENSMUST00000132683 2083 ntBASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Tfip11-201ENSMUST00000031288 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Maob-201ENSMUST00000040820 2411 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Zbtb21-201ENSMUST00000052089 5410 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Mroh8-202ENSMUST00000143663 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Gm8815-201ENSMUST00000173809 620 ntBASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Gm23771-201ENSMUST00000178702 110 ntBASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Gm29155-201ENSMUST00000185910 269 ntBASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Gm28324-201ENSMUST00000187913 264 ntBASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 CT025551.1-201ENSMUST00000223996 692 ntBASIC12.65□□□□□ -0.38
Smc1aQ9CU62 AC115122.1-201ENSMUST00000224850 1040 ntBASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Prrxl1-205ENSMUST00000228878 723 ntBASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Gm43447-201ENSMUST00000198471 1535 ntBASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Agrn-203ENSMUST00000105575 7262 ntTSL 5 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Itsn2-211ENSMUST00000219007 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Raver1-201ENSMUST00000115487 3470 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Smc1aQ9CU62 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Smc1aQ9CU62 Tmod2-202ENSMUST00000098552 9871 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Smc1aQ9CU62 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Smc1aQ9CU62 Cad-211ENSMUST00000202795 6559 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Smc1aQ9CU62 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Smc1aQ9CU62 AC154171.2-201ENSMUST00000225219 2652 ntBASIC12.65□□□□□ -0.39
Smc1aQ9CU62 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Parvg-207ENSMUST00000163667 2700 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Myh8-201ENSMUST00000019625 6149 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms