Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC12.86□□□□□ -0.35
Trim11Q99PQ2 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Trim11Q99PQ2 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim11Q99PQ2 Eif3a-201ENSMUST00000025955 5176 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim11Q99PQ2 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC12.86□□□□□ -0.35
Trim11Q99PQ2 Dnmt3a-203ENSMUST00000111186 5424 ntAPPRIS P3 TSL 5 BASIC12.86□□□□□ -0.35
Trim11Q99PQ2 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim11Q99PQ2 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim11Q99PQ2 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Trim11Q99PQ2 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim11Q99PQ2 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Trim11Q99PQ2 Psd3-213ENSMUST00000212505 3253 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Trim11Q99PQ2 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Ccnt2-201ENSMUST00000027587 6738 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm45532-201ENSMUST00000210342 3620 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Steap3-203ENSMUST00000112641 5158 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Mir680-2-201ENSMUST00000102163 110 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm23251-201ENSMUST00000103773 110 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm4294-201ENSMUST00000105169 614 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm22711-201ENSMUST00000116890 133 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm6397-201ENSMUST00000161973 1069 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm5732-201ENSMUST00000182596 1007 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm37246-201ENSMUST00000192665 835 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 4933401J01Rik-201ENSMUST00000193812 1070 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm18539-201ENSMUST00000204745 1090 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm1821-202ENSMUST00000227415 750 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm7551-201ENSMUST00000089593 1074 ntBASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Snx13-202ENSMUST00000163677 3681 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 4631405K08Rik-201ENSMUST00000180420 2112 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim11Q99PQ2 Tgoln1-201ENSMUST00000070524 5013 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Hspa5-201ENSMUST00000028222 3672 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 AC122273.1-201ENSMUST00000213634 2327 ntBASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Gm7993-201ENSMUST00000200970 1384 ntBASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Dmbx1-203ENSMUST00000124071 4017 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Tubgcp6-201ENSMUST00000041656 5357 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Gm25148-201ENSMUST00000104611 123 ntBASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Gm12217-201ENSMUST00000118858 696 ntBASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Gm15374-201ENSMUST00000119313 844 ntBASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Gm6506-201ENSMUST00000119775 1136 ntBASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Gm12997-201ENSMUST00000120207 640 ntBASIC12.84□□□□□ -0.35
Trim11Q99PQ2 Gm11244-201ENSMUST00000121243 237 ntBASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms