Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Gm3551-201ENSMUST00000190750 664 ntBASIC12.43□□□□□ -0.42
Lig3P97386 Gm9116-201ENSMUST00000192400 1018 ntBASIC12.43□□□□□ -0.42
Lig3P97386 Ighv5-11-201ENSMUST00000193354 371 ntBASIC12.43□□□□□ -0.42
Lig3P97386 Gm5100-201ENSMUST00000195631 589 ntBASIC12.43□□□□□ -0.42
Lig3P97386 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC12.43□□□□□ -0.42
Lig3P97386 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC12.43□□□□□ -0.42
Lig3P97386 Gm45594-201ENSMUST00000211717 241 ntBASIC12.43□□□□□ -0.42
Lig3P97386 Gm9661-201ENSMUST00000221611 1122 ntBASIC12.43□□□□□ -0.42
Lig3P97386 AC124433.1-201ENSMUST00000224483 1063 ntBASIC12.43□□□□□ -0.42
Lig3P97386 Gm8894-201ENSMUST00000074642 666 ntBASIC12.43□□□□□ -0.42
Lig3P97386 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Lig3P97386 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Lig3P97386 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
Lig3P97386 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Suclg2-201ENSMUST00000079847 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lig3P97386 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Lig3P97386 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Lig3P97386 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Lig3P97386 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Man2b2-201ENSMUST00000031002 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC12.42□□□□□ -0.42
Lig3P97386 Gm25063-201ENSMUST00000104666 94 ntBASIC12.42□□□□□ -0.42
Lig3P97386 Gm14193-201ENSMUST00000105067 153 ntBASIC12.42□□□□□ -0.42
Lig3P97386 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Lig3P97386 Gm7722-201ENSMUST00000120646 741 ntBASIC12.42□□□□□ -0.42
Lig3P97386 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC12.42□□□□□ -0.42
Lig3P97386 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC12.42□□□□□ -0.42
Lig3P97386 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Lig3P97386 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC12.42□□□□□ -0.42
Lig3P97386 Gm8531-201ENSMUST00000188319 893 ntBASIC12.42□□□□□ -0.42
Lig3P97386 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lig3P97386 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lig3P97386 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Gm9797-202ENSMUST00000218003 294 ntBASIC12.42□□□□□ -0.42
Lig3P97386 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Lig3P97386 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Lig3P97386 CT009713.5-203ENSMUST00000224218 2079 ntBASIC12.42□□□□□ -0.42
Lig3P97386 Sod3-201ENSMUST00000101208 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lig3P97386 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC12.42□□□□□ -0.42
Lig3P97386 Snx31-203ENSMUST00000161202 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lig3P97386 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Fsd2-201ENSMUST00000042318 3985 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Lig3P97386 Kcnn3-201ENSMUST00000000811 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Lig3P97386 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Spg20-203ENSMUST00000117341 2957 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Gm15036-201ENSMUST00000118880 400 ntBASIC12.41□□□□□ -0.42
Lig3P97386 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
Lig3P97386 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lig3P97386 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 97.8 ms