Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 AC167022.1-201ENSMUST00000218647 1458 ntBASIC13.11□□□□□ -0.31
Traf1P39428 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Gm13668-201ENSMUST00000119237 1001 ntBASIC13.11□□□□□ -0.31
Traf1P39428 Gm14219-201ENSMUST00000120414 288 ntBASIC13.11□□□□□ -0.31
Traf1P39428 Gm13117-201ENSMUST00000120894 691 ntBASIC13.11□□□□□ -0.31
Traf1P39428 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC13.11□□□□□ -0.31
Traf1P39428 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC13.11□□□□□ -0.31
Traf1P39428 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Traf1P39428 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Traf1P39428 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Mir6407-201ENSMUST00000184510 101 ntBASIC13.11□□□□□ -0.31
Traf1P39428 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC13.11□□□□□ -0.31
Traf1P39428 Gm29410-201ENSMUST00000188383 694 ntBASIC13.11□□□□□ -0.31
Traf1P39428 Gm9116-201ENSMUST00000192400 1018 ntBASIC13.11□□□□□ -0.31
Traf1P39428 Gm43163-201ENSMUST00000196571 442 ntBASIC13.11□□□□□ -0.31
Traf1P39428 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Gm18561-201ENSMUST00000206027 804 ntBASIC13.11□□□□□ -0.31
Traf1P39428 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Traf1P39428 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Traf1P39428 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Traf1P39428 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC13.11□□□□□ -0.31
Traf1P39428 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC13.11□□□□□ -0.31
Traf1P39428 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
Traf1P39428 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC13.11□□□□□ -0.31
Traf1P39428 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Traf1P39428 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Traf1P39428 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Traf1P39428 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
Traf1P39428 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Traf1P39428 Surf6-201ENSMUST00000047632 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Traf1P39428 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC13.1□□□□□ -0.31
Traf1P39428 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Traf1P39428 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Traf1P39428 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Traf1P39428 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Traf1P39428 Gm15528-201ENSMUST00000117821 864 ntBASIC13.1□□□□□ -0.31
Traf1P39428 Gm14270-201ENSMUST00000118388 846 ntBASIC13.1□□□□□ -0.31
Traf1P39428 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC13.1□□□□□ -0.31
Traf1P39428 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC13.1□□□□□ -0.31
Traf1P39428 Gm22846-201ENSMUST00000157706 270 ntBASIC13.1□□□□□ -0.31
Traf1P39428 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC13.1□□□□□ -0.31
Traf1P39428 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Gm5342-201ENSMUST00000181982 1003 ntBASIC13.1□□□□□ -0.31
Traf1P39428 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Traf1P39428 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Traf1P39428 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Traf1P39428 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Traf1P39428 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Traf1P39428 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Traf1P39428 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC13.1□□□□□ -0.31
Traf1P39428 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Traf1P39428 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Traf1P39428 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Traf1P39428 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms