Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Col18a1P39061 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC14.6□□□□□ -0.07
Col18a1P39061 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Col18a1P39061 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Scmh1-203ENSMUST00000106298 1995 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Col18a1P39061 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Gm436-201ENSMUST00000105747 1224 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Col18a1P39061 Gm13377-201ENSMUST00000137984 683 ntBASIC14.6□□□□□ -0.07
Col18a1P39061 Gm15579-201ENSMUST00000141299 757 ntTSL 3 BASIC14.6□□□□□ -0.07
Col18a1P39061 A630023P12Rik-203ENSMUST00000141532 638 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 AC160929.1-201ENSMUST00000221247 415 ntBASIC14.6□□□□□ -0.07
Col18a1P39061 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC14.6□□□□□ -0.07
Col18a1P39061 Ccr6-202ENSMUST00000164411 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Col18a1P39061 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC14.59□□□□□ -0.07
Col18a1P39061 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Gm16214-201ENSMUST00000143710 1388 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 AC122840.1-201ENSMUST00000220915 3334 ntBASIC14.59□□□□□ -0.07
Col18a1P39061 Pabpc5-202ENSMUST00000113366 2243 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Col18a1P39061 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Col18a1P39061 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Pde7a-203ENSMUST00000121951 382 ntTSL 3 BASIC14.59□□□□□ -0.07
Col18a1P39061 Gm11629-201ENSMUST00000123784 384 ntTSL 3 BASIC14.59□□□□□ -0.07
Col18a1P39061 Gm26901-204ENSMUST00000193732 631 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Gm9771-201ENSMUST00000198267 1137 ntBASIC14.59□□□□□ -0.07
Col18a1P39061 Gm43821-201ENSMUST00000199198 729 ntTSL 3 BASIC14.59□□□□□ -0.07
Col18a1P39061 Gm32098-201ENSMUST00000211305 479 ntTSL 5 BASIC14.59□□□□□ -0.07
Col18a1P39061 Gm36287-201ENSMUST00000223481 796 ntTSL 5 BASIC14.59□□□□□ -0.07
Col18a1P39061 Olfr578-201ENSMUST00000056235 942 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Col18a1P39061 Olfr1219-201ENSMUST00000099797 936 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Col18a1P39061 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Col18a1P39061 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Mcph1-205ENSMUST00000146819 2067 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 C130071C03Rik-203ENSMUST00000182788 1368 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Gm30228-201ENSMUST00000218501 1949 ntTSL 3 BASIC14.59□□□□□ -0.07
Col18a1P39061 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC14.59□□□□□ -0.07
Col18a1P39061 Gm18806-201ENSMUST00000207607 1775 ntBASIC14.59□□□□□ -0.07
Col18a1P39061 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC14.59□□□□□ -0.07
Col18a1P39061 Krt34-201ENSMUST00000056362 1609 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 AC167022.1-201ENSMUST00000218647 1458 ntBASIC14.59□□□□□ -0.07
Col18a1P39061 Gm7001-201ENSMUST00000219384 1465 ntBASIC14.59□□□□□ -0.07
Col18a1P39061 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col18a1P39061 Zeb2os-201ENSMUST00000127150 1305 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Col18a1P39061 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC14.58□□□□□ -0.07
Col18a1P39061 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col18a1P39061 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col18a1P39061 Apela-201ENSMUST00000124790 945 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Col18a1P39061 Gm17764-201ENSMUST00000185925 391 ntBASIC14.58□□□□□ -0.08
Col18a1P39061 Gm31497-201ENSMUST00000216981 638 ntTSL 5 BASIC14.58□□□□□ -0.08
Col18a1P39061 AC156274.1-201ENSMUST00000219193 634 ntBASIC14.58□□□□□ -0.08
Col18a1P39061 1700029N11Rik-203ENSMUST00000220639 1092 ntTSL 5 BASIC14.58□□□□□ -0.08
Col18a1P39061 Gm46339-201ENSMUST00000222720 3539 ntBASIC14.58□□□□□ -0.08
Col18a1P39061 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Col18a1P39061 Gm26616-202ENSMUST00000195676 3107 ntBASIC14.58□□□□□ -0.08
Col18a1P39061 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Col18a1P39061 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col18a1P39061 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col18a1P39061 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col18a1P39061 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col18a1P39061 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col18a1P39061 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col18a1P39061 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC14.57□□□□□ -0.08
Col18a1P39061 Spaca9-201ENSMUST00000102877 671 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col18a1P39061 Ccpg1os-201ENSMUST00000124565 711 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col18a1P39061 Gm14344-201ENSMUST00000139338 580 ntTSL 3 BASIC14.57□□□□□ -0.08
Col18a1P39061 Gm23899-201ENSMUST00000158112 90 ntBASIC14.57□□□□□ -0.08
Col18a1P39061 Gm28916-201ENSMUST00000186988 699 ntBASIC14.57□□□□□ -0.08
Col18a1P39061 Gm38004-201ENSMUST00000192972 357 ntBASIC14.57□□□□□ -0.08
Col18a1P39061 Tmem238l-203ENSMUST00000211300 930 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
Col18a1P39061 CT025547.1-201ENSMUST00000225127 578 ntBASIC14.57□□□□□ -0.08
Col18a1P39061 Tex29-201ENSMUST00000033909 822 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col18a1P39061 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col18a1P39061 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col18a1P39061 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col18a1P39061 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col18a1P39061 Gm37264-201ENSMUST00000194916 2192 ntBASIC14.57□□□□□ -0.08
Col18a1P39061 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col18a1P39061 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms