Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Gm12990-201ENSMUST00000120372 468 ntBASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Gm24992-201ENSMUST00000157412 130 ntBASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 AC238811.4-201ENSMUST00000178019 1246 ntBASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 AC238940.3-201ENSMUST00000178830 1246 ntBASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Gm18059-201ENSMUST00000208073 580 ntBASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Nt5dc1-206ENSMUST00000213269 802 ntTSL 5 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Gm16380-201ENSMUST00000077997 478 ntBASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b1Q99NB9 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b1Q99NB9 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Sf3b1Q99NB9 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b1Q99NB9 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b1Q99NB9 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gm13600-201ENSMUST00000117949 744 ntBASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gm15197-201ENSMUST00000120526 478 ntBASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gm9081-201ENSMUST00000182346 991 ntBASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 AC124457.1-201ENSMUST00000198845 120 ntBASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gm18514-201ENSMUST00000218980 436 ntBASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 AC153887.1-201ENSMUST00000219154 1253 ntTSL 5 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gm18968-201ENSMUST00000221319 862 ntBASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 AC153152.3-201ENSMUST00000222188 1135 ntBASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 CT025602.2-201ENSMUST00000226553 772 ntBASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sf3b1Q99NB9 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Gm5171-201ENSMUST00000214944 1415 ntBASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Gm25053-201ENSMUST00000103982 133 ntBASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Gm25922-201ENSMUST00000104281 130 ntBASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Gm14740-201ENSMUST00000118538 1150 ntBASIC12.01□□□□□ -0.49
Sf3b1Q99NB9 Gm9673-201ENSMUST00000119287 781 ntBASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms