Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Gm39397-201ENSMUST00000212331 228 ntTSL 5 BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 CT025531.1-201ENSMUST00000214534 622 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Acy1-211ENSMUST00000216400 1030 ntTSL 5 BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Rp9-204ENSMUST00000216973 796 ntAPPRIS ALT2 TSL 3 BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 AC154435.1-201ENSMUST00000223938 959 ntBASIC15.45■□□□□ 0.06
Usp40Q8BWR4 CT010480.2-201ENSMUST00000225424 737 ntBASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Gm7536-201ENSMUST00000077389 444 ntBASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Gm5453-201ENSMUST00000080866 447 ntBASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 AC174797.1-201ENSMUST00000224339 1649 ntBASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 AC109214.1-201ENSMUST00000219520 1372 ntBASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Glb1l-201ENSMUST00000113623 2339 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Usp40Q8BWR4 Gm17745-201ENSMUST00000212186 1692 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Ces2f-203ENSMUST00000212926 1430 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Kdm6bos-201ENSMUST00000129924 840 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Anp32e-206ENSMUST00000169426 915 ntTSL 5 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 4930578M01Rik-201ENSMUST00000180490 907 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Mir8091-201ENSMUST00000183602 139 ntBASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Gm28096-201ENSMUST00000191391 824 ntTSL 5 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 2410002F23Rik-220ENSMUST00000191537 872 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Gm4903-201ENSMUST00000210462 405 ntBASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Stk31-201ENSMUST00000024171 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Fam83a-202ENSMUST00000160942 2876 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Gm13722-201ENSMUST00000117964 3066 ntBASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Arhgef3-204ENSMUST00000225949 3198 ntBASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Slc13a5-206ENSMUST00000208912 1751 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Usp40Q8BWR4 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Cops3-201ENSMUST00000019517 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm11380-201ENSMUST00000118067 560 ntBASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm15036-201ENSMUST00000118880 400 ntBASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Nnmt-202ENSMUST00000119426 912 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gsta3-202ENSMUST00000121676 894 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm13783-201ENSMUST00000131634 732 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm27191-201ENSMUST00000145973 448 ntTSL 3 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm9162-201ENSMUST00000182081 991 ntBASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm5870-201ENSMUST00000196461 282 ntBASIC15.43■□□□□ 0.06
Usp40Q8BWR4 9530062K07Rik-201ENSMUST00000203332 787 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm46224-201ENSMUST00000220221 1242 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm2696-202ENSMUST00000220393 684 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Uqcc3-201ENSMUST00000096253 829 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Brcc3-203ENSMUST00000118428 2093 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC15.43■□□□□ 0.06
Usp40Q8BWR4 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms