Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Fyco1-202ENSMUST00000167595 7692 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Clasp2-201ENSMUST00000111838 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Arfgap3-202ENSMUST00000226124 2461 ntAPPRIS ALT2 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Aco2-201ENSMUST00000023116 2918 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Dchs2-201ENSMUST00000191829 10783 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Usp2-203ENSMUST00000114830 2122 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gm15207-201ENSMUST00000119259 442 ntBASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC10.8□□□□□ -0.68
Nr1h4Q60641 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 AY702102-202ENSMUST00000194651 1173 ntBASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 AC113082.1-201ENSMUST00000217324 327 ntBASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gm9797-202ENSMUST00000218003 294 ntBASIC10.8□□□□□ -0.68
Nr1h4Q60641 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Cdh15-201ENSMUST00000034443 3251 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gm8862-201ENSMUST00000198379 1346 ntBASIC10.8□□□□□ -0.68
Nr1h4Q60641 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 AC131068.2-201ENSMUST00000226175 1453 ntBASIC10.8□□□□□ -0.68
Nr1h4Q60641 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Gm44573-201ENSMUST00000191753 2370 ntBASIC10.8□□□□□ -0.68
Nr1h4Q60641 Ing3-202ENSMUST00000115389 2546 ntTSL 5 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Ank1-206ENSMUST00000117662 6257 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nr1h4Q60641 Arvcf-203ENSMUST00000115612 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Gm10912-201ENSMUST00000104891 1661 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 2700049A03Rik-203ENSMUST00000149564 5763 ntAPPRIS P4 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Peg10-203ENSMUST00000176551 6567 ntTSL 2 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Hjurp-201ENSMUST00000054674 4878 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Gm28635-201ENSMUST00000189772 4734 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Ptbp1-206ENSMUST00000165704 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Gm45416-201ENSMUST00000209713 2201 ntBASIC10.79□□□□□ -0.68
Nr1h4Q60641 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Gm12957-201ENSMUST00000117835 377 ntBASIC10.79□□□□□ -0.68
Nr1h4Q60641 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 AC141438.2-201ENSMUST00000215068 271 ntBASIC10.79□□□□□ -0.68
Nr1h4Q60641 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 AL645745.1-201ENSMUST00000222202 5348 ntTSL 2 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Mapre2-203ENSMUST00000118826 3052 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nr1h4Q60641 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms