Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col18a1P39061 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col18a1P39061 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col18a1P39061 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col18a1P39061 Krtap29-1-201ENSMUST00000105051 1029 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col18a1P39061 Rpain-202ENSMUST00000108529 282 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Gm15033-201ENSMUST00000118188 673 ntBASIC14.62□□□□□ -0.07
Col18a1P39061 Gm8661-201ENSMUST00000118688 992 ntBASIC14.62□□□□□ -0.07
Col18a1P39061 Gm12637-201ENSMUST00000130501 368 ntTSL 3 BASIC14.62□□□□□ -0.07
Col18a1P39061 Gm13778-202ENSMUST00000146633 537 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Gm32772-203ENSMUST00000207022 675 ntTSL 3 BASIC14.62□□□□□ -0.07
Col18a1P39061 Gm3889-201ENSMUST00000212467 612 ntBASIC14.62□□□□□ -0.07
Col18a1P39061 4933427E13Rik-201ENSMUST00000044347 381 ntTSL 5 BASIC14.62□□□□□ -0.07
Col18a1P39061 BC048562-201ENSMUST00000057265 690 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC14.62□□□□□ -0.07
Col18a1P39061 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
Col18a1P39061 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Fam216b-202ENSMUST00000118785 1447 ntTSL 5 BASIC14.62□□□□□ -0.07
Col18a1P39061 Cct2-201ENSMUST00000047672 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 1700092E19Rik-202ENSMUST00000154703 1650 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Olfr62-201ENSMUST00000102666 949 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col18a1P39061 Gstm6-204ENSMUST00000106684 1179 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Gm16552-201ENSMUST00000162348 685 ntTSL 3 BASIC14.62□□□□□ -0.07
Col18a1P39061 Gm22876-201ENSMUST00000175450 298 ntBASIC14.62□□□□□ -0.07
Col18a1P39061 H2al1e-201ENSMUST00000178979 494 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col18a1P39061 Gm29157-201ENSMUST00000188753 612 ntBASIC14.62□□□□□ -0.07
Col18a1P39061 H2al1b-201ENSMUST00000189531 495 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col18a1P39061 Gm42875-201ENSMUST00000197674 1015 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 2310039L15Rik-203ENSMUST00000220058 727 ntTSL 5 BASIC14.62□□□□□ -0.07
Col18a1P39061 AC129017.2-201ENSMUST00000226118 1284 ntBASIC14.62□□□□□ -0.07
Col18a1P39061 Gm28653-202ENSMUST00000227082 521 ntBASIC14.62□□□□□ -0.07
Col18a1P39061 AC122459.4-201ENSMUST00000228654 551 ntBASIC14.62□□□□□ -0.07
Col18a1P39061 3110009E18Rik-201ENSMUST00000027637 1007 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Myl10-201ENSMUST00000005611 688 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col18a1P39061 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col18a1P39061 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC14.62□□□□□ -0.07
Col18a1P39061 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC14.61□□□□□ -0.07
Col18a1P39061 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Gm43463-201ENSMUST00000195967 1803 ntBASIC14.61□□□□□ -0.07
Col18a1P39061 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col18a1P39061 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Col18a1P39061 Nbdy-204ENSMUST00000185492 1346 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Cd247-202ENSMUST00000027849 1317 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col18a1P39061 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Oosp2-201ENSMUST00000121793 677 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Gm4996-201ENSMUST00000122042 784 ntBASIC14.61□□□□□ -0.07
Col18a1P39061 Eif4a-ps4-201ENSMUST00000122226 1218 ntBASIC14.61□□□□□ -0.07
Col18a1P39061 Aif1l-207ENSMUST00000148056 670 ntTSL 5 BASIC14.61□□□□□ -0.07
Col18a1P39061 Gm22669-201ENSMUST00000158723 318 ntBASIC14.61□□□□□ -0.07
Col18a1P39061 Gm1758-201ENSMUST00000164528 606 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Col18a1P39061 Gm2316-201ENSMUST00000190613 921 ntBASIC14.61□□□□□ -0.07
Col18a1P39061 Gm37819-201ENSMUST00000194626 1065 ntBASIC14.61□□□□□ -0.07
Col18a1P39061 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col18a1P39061 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col18a1P39061 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Gm44086-201ENSMUST00000203251 2349 ntBASIC14.61□□□□□ -0.07
Col18a1P39061 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC14.61□□□□□ -0.07
Col18a1P39061 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC14.61□□□□□ -0.07
Col18a1P39061 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col18a1P39061 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Olfr543-202ENSMUST00000219647 1456 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Col18a1P39061 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 AC147366.2-201ENSMUST00000226859 2038 ntBASIC14.6□□□□□ -0.07
Col18a1P39061 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC14.6□□□□□ -0.07
Col18a1P39061 Gm11800-201ENSMUST00000120050 579 ntBASIC14.6□□□□□ -0.07
Col18a1P39061 Gm14108-201ENSMUST00000122234 494 ntBASIC14.6□□□□□ -0.07
Col18a1P39061 Gm12679-201ENSMUST00000123899 636 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Naa38-204ENSMUST00000144531 671 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Gm9513-201ENSMUST00000165591 306 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Gm6970-201ENSMUST00000169692 666 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Col18a1P39061 Gm24368-201ENSMUST00000175388 106 ntBASIC14.6□□□□□ -0.07
Col18a1P39061 Rbp2-204ENSMUST00000189446 803 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
Col18a1P39061 Gm32102-201ENSMUST00000196885 241 ntBASIC14.6□□□□□ -0.07
Col18a1P39061 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC14.6□□□□□ -0.07
Col18a1P39061 AC163351.1-201ENSMUST00000225539 737 ntBASIC14.6□□□□□ -0.07
Col18a1P39061 Bpifa5-201ENSMUST00000028986 1089 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Hcst-201ENSMUST00000075062 442 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col18a1P39061 Gm10689-201ENSMUST00000098864 432 ntBASIC14.6□□□□□ -0.07
Col18a1P39061 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms