Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Brf1Q8CFK2 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Brf1Q8CFK2 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Brf1Q8CFK2 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Brf1Q8CFK2 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Brf1Q8CFK2 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm19178-201ENSMUST00000217524 1819 ntBASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm14314-201ENSMUST00000118225 1015 ntBASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm16071-201ENSMUST00000119589 793 ntBASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm24992-201ENSMUST00000157412 130 ntBASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm17826-201ENSMUST00000189720 798 ntBASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm37826-201ENSMUST00000195329 322 ntBASIC13.65□□□□□ -0.22
Brf1Q8CFK2 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm42997-202ENSMUST00000200321 985 ntBASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm45398-201ENSMUST00000210561 165 ntBASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Brf1Q8CFK2 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 AC174797.1-201ENSMUST00000224339 1649 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Swap70-201ENSMUST00000033325 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Sema4d-201ENSMUST00000021900 4482 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm9915-201ENSMUST00000066196 1383 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Mup-ps29-201ENSMUST00000122281 202 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Mir1943-201ENSMUST00000158276 73 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm6485-201ENSMUST00000160676 439 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Mir3102-201ENSMUST00000175555 104 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Mrip-ps-201ENSMUST00000184613 940 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm3551-201ENSMUST00000190750 664 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm37299-201ENSMUST00000193951 826 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm9645-201ENSMUST00000197131 792 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm42867-201ENSMUST00000202995 469 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm44421-201ENSMUST00000205064 1221 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm44980-201ENSMUST00000205826 314 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Nt5dc1-206ENSMUST00000213269 802 ntTSL 5 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Mypopos-202ENSMUST00000205975 2321 ntBASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Mybph-201ENSMUST00000038445 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC13.64□□□□□ -0.23
Brf1Q8CFK2 Gm6831-202ENSMUST00000213025 1673 ntBASIC13.63□□□□□ -0.23
Brf1Q8CFK2 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms