Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Upf3bQ3ULL6 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Tyk2-203ENSMUST00000214454 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm23272-201ENSMUST00000104053 129 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm25148-201ENSMUST00000104611 123 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm8111-201ENSMUST00000117659 987 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm15617-201ENSMUST00000118973 771 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm15374-201ENSMUST00000119313 844 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm37986-201ENSMUST00000193285 383 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm43916-201ENSMUST00000205062 967 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm45118-201ENSMUST00000208928 825 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Gm23105-201ENSMUST00000083719 134 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Upf3bQ3ULL6 Fkbp15-203ENSMUST00000098033 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm37969-201ENSMUST00000195777 3409 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm43931-201ENSMUST00000204817 2870 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm22846-201ENSMUST00000157706 270 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm37284-201ENSMUST00000193607 539 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm9353-201ENSMUST00000200472 604 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm44421-201ENSMUST00000205064 1221 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm45398-201ENSMUST00000210561 165 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 CT485606.1-201ENSMUST00000213187 878 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 AC166992.1-201ENSMUST00000216356 565 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 AC154849.4-201ENSMUST00000224868 365 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Dnali1-201ENSMUST00000036383 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm43081-201ENSMUST00000199082 1380 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Adgrv1-214ENSMUST00000224088 1492 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Sema4d-201ENSMUST00000021900 4482 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Gm36987-201ENSMUST00000194704 2979 ntBASIC12.12□□□□□ -0.47
Upf3bQ3ULL6 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 85.1 ms