Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Rgr-203ENSMUST00000225070 4704 ntBASIC13.16□□□□□ -0.3
Traf1P39428 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC13.16□□□□□ -0.3
Traf1P39428 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Traf1P39428 Gm16341-201ENSMUST00000126385 377 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC13.16□□□□□ -0.3
Traf1P39428 Gm25492-201ENSMUST00000157383 129 ntBASIC13.16□□□□□ -0.3
Traf1P39428 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC13.16□□□□□ -0.3
Traf1P39428 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC13.16□□□□□ -0.3
Traf1P39428 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC13.16□□□□□ -0.3
Traf1P39428 Gm19091-201ENSMUST00000208120 978 ntBASIC13.16□□□□□ -0.3
Traf1P39428 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC13.16□□□□□ -0.3
Traf1P39428 Gm45758-201ENSMUST00000212448 1006 ntBASIC13.16□□□□□ -0.3
Traf1P39428 AC102368.1-201ENSMUST00000227161 892 ntBASIC13.16□□□□□ -0.3
Traf1P39428 Gm10263-201ENSMUST00000085163 300 ntBASIC13.16□□□□□ -0.3
Traf1P39428 n-R5s211-201ENSMUST00000093689 119 ntBASIC13.16□□□□□ -0.3
Traf1P39428 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 CT010447.1-201ENSMUST00000225657 1608 ntBASIC13.16□□□□□ -0.3
Traf1P39428 S1pr2-201ENSMUST00000054197 6394 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Traf1P39428 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Traf1P39428 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Traf1P39428 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Gm25063-201ENSMUST00000104666 94 ntBASIC13.15□□□□□ -0.3
Traf1P39428 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC13.15□□□□□ -0.3
Traf1P39428 Gm13937-201ENSMUST00000121000 988 ntBASIC13.15□□□□□ -0.3
Traf1P39428 Gm16397-201ENSMUST00000122201 494 ntBASIC13.15□□□□□ -0.3
Traf1P39428 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC13.15□□□□□ -0.3
Traf1P39428 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC13.15□□□□□ -0.3
Traf1P39428 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC13.15□□□□□ -0.3
Traf1P39428 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Traf1P39428 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Traf1P39428 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Traf1P39428 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Traf1P39428 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Traf1P39428 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Gm5100-201ENSMUST00000195631 589 ntBASIC13.15□□□□□ -0.3
Traf1P39428 Gm42816-201ENSMUST00000198433 325 ntBASIC13.15□□□□□ -0.3
Traf1P39428 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Traf1P39428 AC122346.3-201ENSMUST00000223983 306 ntBASIC13.15□□□□□ -0.3
Traf1P39428 Gm9873-201ENSMUST00000063891 1097 ntBASIC13.15□□□□□ -0.3
Traf1P39428 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Traf1P39428 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC13.15□□□□□ -0.3
Traf1P39428 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Lmo7-205ENSMUST00000159314 5774 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Traf1P39428 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
Traf1P39428 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.31
Traf1P39428 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
Traf1P39428 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Traf1P39428 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 CT025681.1-201ENSMUST00000225453 1855 ntBASIC13.14□□□□□ -0.31
Traf1P39428 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Gm36957-201ENSMUST00000192982 2824 ntBASIC13.14□□□□□ -0.31
Traf1P39428 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Traf1P39428 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC13.14□□□□□ -0.31
Traf1P39428 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC13.14□□□□□ -0.31
Traf1P39428 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC13.14□□□□□ -0.31
Traf1P39428 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Traf1P39428 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC13.14□□□□□ -0.31
Traf1P39428 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
Traf1P39428 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Traf1P39428 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Traf1P39428 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Traf1P39428 Gm10169-201ENSMUST00000121822 348 ntBASIC13.14□□□□□ -0.31
Traf1P39428 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 71.9 ms