Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC12.26□□□□□ -0.45
RaraP11416 Gm18539-201ENSMUST00000204745 1090 ntBASIC12.26□□□□□ -0.45
RaraP11416 Gm45186-201ENSMUST00000206874 478 ntBASIC12.26□□□□□ -0.45
RaraP11416 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
RaraP11416 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC12.26□□□□□ -0.45
RaraP11416 Sec24d-201ENSMUST00000047923 3903 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC12.26□□□□□ -0.45
RaraP11416 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
RaraP11416 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Gm6559-201ENSMUST00000204678 1694 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RaraP11416 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Rsrc2-202ENSMUST00000057795 2270 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
RaraP11416 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.25□□□□□ -0.45
RaraP11416 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
RaraP11416 Gm15515-201ENSMUST00000117827 822 ntBASIC12.25□□□□□ -0.45
RaraP11416 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC12.25□□□□□ -0.45
RaraP11416 Gm13461-201ENSMUST00000120980 662 ntBASIC12.25□□□□□ -0.45
RaraP11416 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Gm5733-201ENSMUST00000190232 939 ntBASIC12.25□□□□□ -0.45
RaraP11416 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC12.25□□□□□ -0.45
RaraP11416 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
RaraP11416 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
RaraP11416 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Tctn3-201ENSMUST00000025981 2743 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 AC153506.1-201ENSMUST00000218768 2915 ntBASIC12.25□□□□□ -0.45
RaraP11416 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
RaraP11416 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Slc37a4-201ENSMUST00000165839 2086 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC12.25□□□□□ -0.45
RaraP11416 AC169511.2-201ENSMUST00000226674 2063 ntBASIC12.25□□□□□ -0.45
RaraP11416 Dcun1d2-206ENSMUST00000203604 2112 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Mx2-202ENSMUST00000188251 2421 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RaraP11416 Gm37648-201ENSMUST00000192072 2563 ntBASIC12.25□□□□□ -0.45
RaraP11416 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Colq-201ENSMUST00000112027 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
RaraP11416 Ift88-201ENSMUST00000122063 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Plpp3-201ENSMUST00000064139 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
RaraP11416 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC12.24□□□□□ -0.45
RaraP11416 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
RaraP11416 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
RaraP11416 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Gm13263-201ENSMUST00000121271 838 ntBASIC12.24□□□□□ -0.45
RaraP11416 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Gm26083-201ENSMUST00000157904 193 ntBASIC12.24□□□□□ -0.45
RaraP11416 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 Gm4819-201ENSMUST00000182170 1009 ntBASIC12.24□□□□□ -0.45
RaraP11416 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RaraP11416 Gm38271-201ENSMUST00000192296 1603 ntBASIC12.24□□□□□ -0.45
RaraP11416 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Gm42682-201ENSMUST00000198349 1265 ntBASIC12.24□□□□□ -0.45
RaraP11416 Gm45856-201ENSMUST00000212752 416 ntBASIC12.24□□□□□ -0.45
RaraP11416 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
RaraP11416 Gm5171-201ENSMUST00000214944 1415 ntBASIC12.24□□□□□ -0.45
RaraP11416 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Gm10436-202ENSMUST00000220521 1788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RaraP11416 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 85.3 ms