Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hoxd3P09027 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
Hoxd3P09027 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
Hoxd3P09027 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hoxd3P09027 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Hoxd3P09027 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hoxd3P09027 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC9.13□□□□□ -0.95
Hoxd3P09027 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Mthfr-201ENSMUST00000069604 6072 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm5725-201ENSMUST00000105195 924 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm15566-201ENSMUST00000121130 590 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm14102-201ENSMUST00000147678 464 ntTSL 2 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm8653-201ENSMUST00000163096 924 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Vmn1r129-201ENSMUST00000165961 924 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Vmn1r117-201ENSMUST00000166937 924 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm8720-201ENSMUST00000168392 924 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm6164-201ENSMUST00000169774 924 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm24514-201ENSMUST00000174961 285 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm26238-201ENSMUST00000175538 117 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Rian-205ENSMUST00000182100 1017 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm27845-201ENSMUST00000184479 114 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm27390-201ENSMUST00000184516 176 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hoxd3P09027 4930521E06Rik-201ENSMUST00000186732 905 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm29499-201ENSMUST00000189151 486 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm28329-201ENSMUST00000191208 689 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm29171-201ENSMUST00000191397 486 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm37480-201ENSMUST00000194795 550 ntTSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Mir7686-201ENSMUST00000200604 57 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Olfr1295-201ENSMUST00000207283 1282 ntAPPRIS P1 TSL 2 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm7395-201ENSMUST00000216059 1045 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm14267-206ENSMUST00000226870 1209 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Krtap13-201ENSMUST00000053149 882 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Olfr1161-201ENSMUST00000054845 1012 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Raet1e-201ENSMUST00000065527 1274 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm10652-201ENSMUST00000199790 2622 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm21064-201ENSMUST00000189723 1375 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hoxd3P09027 Gm43081-201ENSMUST00000199082 1380 ntBASIC9.12□□□□□ -0.95
Hoxd3P09027 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hoxd3P09027 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hoxd3P09027 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hoxd3P09027 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hoxd3P09027 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hoxd3P09027 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hoxd3P09027 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hoxd3P09027 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hoxd3P09027 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hoxd3P09027 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms