Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Gm11509-201ENSMUST00000117358 325 ntBASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Gm14723-201ENSMUST00000118686 215 ntBASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Gm27320-201ENSMUST00000184892 109 ntBASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Gm7895-201ENSMUST00000187459 1173 ntBASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Gm42626-201ENSMUST00000196866 1148 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 AC122371.3-201ENSMUST00000223402 1061 ntBASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Bach1-201ENSMUST00000026703 5867 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Cdk5rap1-201ENSMUST00000028990 1970 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Tnfrsf9-201ENSMUST00000030808 2099 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Zfp36-201ENSMUST00000051241 2790 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Fam47e-202ENSMUST00000131166 1500 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Pcdh1F7BJK1 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Armcx4-201ENSMUST00000124226 7996 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Ccdc93-202ENSMUST00000112621 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Suclg2-201ENSMUST00000079847 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Ighv4-2-201ENSMUST00000192975 362 ntBASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Gm43758-201ENSMUST00000199500 367 ntBASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Gm18615-201ENSMUST00000222919 1031 ntBASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 AC125117.2-201ENSMUST00000228344 1140 ntBASIC10.21□□□□□ -0.77
Pcdh1F7BJK1 Tcp10a-202ENSMUST00000128533 2589 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Gm8862-201ENSMUST00000198379 1346 ntBASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Gm9072-201ENSMUST00000218390 1514 ntBASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Prkd2-201ENSMUST00000086104 3628 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Cyp2b10-202ENSMUST00000072438 1916 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Pcdh1F7BJK1 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Dab2-203ENSMUST00000110663 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Gm24255-201ENSMUST00000104481 128 ntBASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Gm8876-201ENSMUST00000120768 1122 ntBASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Gm15276-201ENSMUST00000145953 498 ntBASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Mfap3l-204ENSMUST00000161702 2215 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Gm5616-201ENSMUST00000165252 384 ntBASIC10.2□□□□□ -0.78
Pcdh1F7BJK1 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms