Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Fam234b-201ENSMUST00000111915 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Zfat-205ENSMUST00000162173 3561 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 AC173482.6-201ENSMUST00000225889 1741 ntBASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Kcnn3-201ENSMUST00000000811 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Mfap3l-204ENSMUST00000161702 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Mrgpre-201ENSMUST00000054048 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Calu-201ENSMUST00000031779 3229 ntAPPRIS P5 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Ddx52-201ENSMUST00000049257 3194 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 1810053B23Rik-205ENSMUST00000188056 1592 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Ndufs1-203ENSMUST00000168099 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lima1Q9ERG0 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Arhgap24-205ENSMUST00000112853 2853 ntTSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Ppp1r10-201ENSMUST00000087210 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Rpe65-202ENSMUST00000196999 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Gm13347-201ENSMUST00000120298 1353 ntBASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Arhgap15os-201ENSMUST00000139948 1761 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Gm43807-201ENSMUST00000200678 1781 ntBASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Mdm1-201ENSMUST00000020437 3074 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Gm11660-201ENSMUST00000120955 412 ntBASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Gm38000-201ENSMUST00000192390 1215 ntBASIC11.19□□□□□ -0.62
Lima1Q9ERG0 AY036118-201ENSMUST00000200021 923 ntBASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Gm5705-201ENSMUST00000066241 711 ntBASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Caprin1-202ENSMUST00000111147 4069 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Sp140-201ENSMUST00000080204 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Lima1Q9ERG0 Carns1-201ENSMUST00000167055 3968 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Ddr1-202ENSMUST00000097333 3593 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Slc1a2-201ENSMUST00000005220 2127 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Ndor1-201ENSMUST00000100329 4517 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Gm14150-201ENSMUST00000122404 1354 ntBASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Dkk2-201ENSMUST00000029665 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Tnk2-207ENSMUST00000115126 4358 ntTSL 5 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Tgfb1i1-201ENSMUST00000070656 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Gm8752-201ENSMUST00000173427 1694 ntBASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Ntrk3-205ENSMUST00000193002 2678 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Nfic-201ENSMUST00000020461 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Dnmbp-206ENSMUST00000212592 3901 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Ptpn11-201ENSMUST00000054547 5535 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Gm12463-201ENSMUST00000118271 849 ntBASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC11.18□□□□□ -0.62
Lima1Q9ERG0 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Gm26083-201ENSMUST00000157904 193 ntBASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Lima1Q9ERG0 Ighv4-2-201ENSMUST00000192975 362 ntBASIC11.18□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms