Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Gm23912-201ENSMUST00000104687 87 ntBASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Gm27530-201ENSMUST00000184096 98 ntBASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Gm7395-201ENSMUST00000216059 1045 ntBASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Gm18974-201ENSMUST00000221478 1031 ntBASIC12.76□□□□□ -0.37
Smc1aQ9CU62 AC151275.1-201ENSMUST00000224870 585 ntBASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Sema4a-201ENSMUST00000029700 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Smc1aQ9CU62 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Zfp608-201ENSMUST00000064763 6112 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Gm8956-201ENSMUST00000203939 825 ntBASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Gm9463-201ENSMUST00000206707 601 ntBASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 AC091458.1-201ENSMUST00000220902 1361 ntBASIC12.75□□□□□ -0.37
Smc1aQ9CU62 AC154290.1-201ENSMUST00000223786 1240 ntBASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Smc1aQ9CU62 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.75□□□□□ -0.37
Smc1aQ9CU62 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Gm45206-201ENSMUST00000206885 2285 ntBASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Ppp1r16b-203ENSMUST00000103116 6370 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Zfp30-202ENSMUST00000122387 3342 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Gm14150-201ENSMUST00000122404 1354 ntBASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Gm11663-201ENSMUST00000117888 290 ntBASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Gm17831-201ENSMUST00000205579 900 ntBASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 AC171241.1-201ENSMUST00000228144 1166 ntBASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Gm6781-201ENSMUST00000038304 1242 ntBASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Plekhn1-204ENSMUST00000218699 3196 ntTSL 2 BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms