Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Gm28686-201ENSMUST00000187404 609 ntBASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Gm5982-201ENSMUST00000196234 512 ntBASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 AC113082.1-201ENSMUST00000217324 327 ntBASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Gm43372-201ENSMUST00000202662 3016 ntBASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Amotl1-201ENSMUST00000013220 8957 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Ank3-220ENSMUST00000182439 2586 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Ppp1r10-201ENSMUST00000087210 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 C730027H18Rik-201ENSMUST00000218381 2300 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Gm13347-201ENSMUST00000120298 1353 ntBASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ccdc40Q8BI79 Gm37954-201ENSMUST00000195400 2071 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Zfp36-201ENSMUST00000051241 2790 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Gm6605-201ENSMUST00000031488 2574 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Gm14724-201ENSMUST00000118400 537 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Gm8566-201ENSMUST00000120174 465 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Gm12196-201ENSMUST00000120954 262 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Gm8815-201ENSMUST00000173809 620 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Gm7003-201ENSMUST00000195089 312 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 AC134869.4-202ENSMUST00000224350 837 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Gm5537-201ENSMUST00000091117 1252 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Cep350-204ENSMUST00000138762 13307 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Gm10463-202ENSMUST00000195772 2889 ntBASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 Nucks1-201ENSMUST00000062264 5998 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ccdc40Q8BI79 4632411P08Rik-201ENSMUST00000181005 3237 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Gm13812-201ENSMUST00000118061 1347 ntBASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Gm13810-201ENSMUST00000118584 1347 ntBASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Stox2-206ENSMUST00000210030 2734 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Gm11298-201ENSMUST00000120503 1799 ntBASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Pigc-205ENSMUST00000193784 4207 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 6430562O15Rik-201ENSMUST00000180491 2488 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Gm43438-201ENSMUST00000198133 379 ntBASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Gm2965-201ENSMUST00000198365 343 ntBASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Lect2-202ENSMUST00000225183 823 ntBASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Bach1-201ENSMUST00000026703 5867 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Cuzd1-201ENSMUST00000046611 2256 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Gm45199-201ENSMUST00000207640 1507 ntBASIC11.9□□□□□ -0.5
Ccdc40Q8BI79 Zfp608-201ENSMUST00000064763 6112 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Ccdc40Q8BI79 Nfya-202ENSMUST00000078800 3653 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.51
Ccdc40Q8BI79 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.51
Ccdc40Q8BI79 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Ccdc40Q8BI79 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Ccdc40Q8BI79 Tardbp-209ENSMUST00000165113 6495 ntTSL 5 BASIC11.9□□□□□ -0.51
Ccdc40Q8BI79 Gm14023-201ENSMUST00000144178 1781 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms