Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Gm3642-201ENSMUST00000166895 1762 ntAPPRIS P5 TSL 5 BASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 Gm44573-201ENSMUST00000191753 2370 ntBASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 Nit1-203ENSMUST00000111296 1394 ntTSL 5 BASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 AC154517.2-201ENSMUST00000220829 2458 ntBASIC12.93□□□□□ -0.34
Ddx55Q6ZPL9 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Usp2-208ENSMUST00000177054 2370 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Gm23255-201ENSMUST00000102244 110 ntBASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Gm12418-201ENSMUST00000118116 942 ntBASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Gm22344-201ENSMUST00000122642 278 ntBASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Plet1os-202ENSMUST00000190941 1119 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 4930557B06Rik-201ENSMUST00000200193 381 ntBASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Gm39091-201ENSMUST00000206189 553 ntTSL 2 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Gm4930-201ENSMUST00000219926 1087 ntBASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Gm40910-202ENSMUST00000223077 569 ntTSL 5 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 AC152169.1-201ENSMUST00000223901 701 ntBASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 AC154435.1-201ENSMUST00000223938 959 ntBASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Ensa-202ENSMUST00000058230 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC12.92□□□□□ -0.34
Ddx55Q6ZPL9 Cops3-201ENSMUST00000019517 1646 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Gm6758-201ENSMUST00000119643 1055 ntBASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Gm5395-201ENSMUST00000121650 915 ntBASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Gm15982-201ENSMUST00000121681 554 ntBASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Gm18014-201ENSMUST00000183369 817 ntBASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Gm17796-201ENSMUST00000189015 1213 ntBASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Prm2-202ENSMUST00000189593 674 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Ighv5-8-202ENSMUST00000191967 337 ntBASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Gm43244-201ENSMUST00000196994 1285 ntBASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Gm42867-201ENSMUST00000202995 469 ntBASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Rp9-204ENSMUST00000216973 796 ntAPPRIS ALT2 TSL 3 BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Nkain2-205ENSMUST00000219125 1166 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Gm42970-201ENSMUST00000196407 1352 ntBASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Gm8271-201ENSMUST00000171053 1469 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Ptprm-203ENSMUST00000224091 3773 ntBASIC12.91□□□□□ -0.34
Ddx55Q6ZPL9 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx55Q6ZPL9 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.9□□□□□ -0.34
Ddx55Q6ZPL9 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.34
Ddx55Q6ZPL9 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx55Q6ZPL9 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx55Q6ZPL9 Gm14005-209ENSMUST00000224993 1832 ntBASIC12.9□□□□□ -0.34
Ddx55Q6ZPL9 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx55Q6ZPL9 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx55Q6ZPL9 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx55Q6ZPL9 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx55Q6ZPL9 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms