Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm10548-201ENSMUST00000097631 2629 ntBASIC13.19□□□□□ -0.3
Traf1P39428 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC13.19□□□□□ -0.3
Traf1P39428 AC124397.2-201ENSMUST00000225575 2215 ntBASIC13.19□□□□□ -0.3
Traf1P39428 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Gm18986-201ENSMUST00000216029 1986 ntBASIC13.18□□□□□ -0.3
Traf1P39428 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Traf1P39428 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC13.18□□□□□ -0.3
Traf1P39428 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Gm11628-201ENSMUST00000117568 171 ntBASIC13.18□□□□□ -0.3
Traf1P39428 Gm13422-201ENSMUST00000118834 504 ntBASIC13.18□□□□□ -0.3
Traf1P39428 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC13.18□□□□□ -0.3
Traf1P39428 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC13.18□□□□□ -0.3
Traf1P39428 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC13.18□□□□□ -0.3
Traf1P39428 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC13.18□□□□□ -0.3
Traf1P39428 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC13.18□□□□□ -0.3
Traf1P39428 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC13.18□□□□□ -0.3
Traf1P39428 AC114645.1-201ENSMUST00000215831 187 ntBASIC13.18□□□□□ -0.3
Traf1P39428 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC13.18□□□□□ -0.3
Traf1P39428 CT010506.1-201ENSMUST00000223673 349 ntBASIC13.18□□□□□ -0.3
Traf1P39428 Lgi3-203ENSMUST00000226548 1001 ntBASIC13.18□□□□□ -0.3
Traf1P39428 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Traf1P39428 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC13.18□□□□□ -0.3
Traf1P39428 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Traf1P39428 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Traf1P39428 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Traf1P39428 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Traf1P39428 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Traf1P39428 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Traf1P39428 Auts2-209ENSMUST00000161804 5392 ntAPPRIS P5 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Traf1P39428 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC13.17□□□□□ -0.3
Traf1P39428 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
Traf1P39428 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC13.17□□□□□ -0.3
Traf1P39428 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC13.17□□□□□ -0.3
Traf1P39428 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Traf1P39428 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC13.17□□□□□ -0.3
Traf1P39428 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC13.17□□□□□ -0.3
Traf1P39428 Gm6407-201ENSMUST00000176468 549 ntBASIC13.17□□□□□ -0.3
Traf1P39428 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Gm5298-201ENSMUST00000201122 892 ntBASIC13.17□□□□□ -0.3
Traf1P39428 Gm44008-201ENSMUST00000204345 412 ntBASIC13.17□□□□□ -0.3
Traf1P39428 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Traf1P39428 Gm45856-201ENSMUST00000212752 416 ntBASIC13.17□□□□□ -0.3
Traf1P39428 Gm6653-201ENSMUST00000218063 1288 ntBASIC13.17□□□□□ -0.3
Traf1P39428 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Olfr335-ps-201ENSMUST00000223545 939 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Traf1P39428 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Traf1P39428 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Traf1P39428 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Traf1P39428 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Traf1P39428 AC153506.1-201ENSMUST00000218768 2915 ntBASIC13.17□□□□□ -0.3
Traf1P39428 Zfp609-201ENSMUST00000159109 7777 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Traf1P39428 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Traf1P39428 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Traf1P39428 C2cd5-204ENSMUST00000203187 3494 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Traf1P39428 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms