Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC13.19□□□□□ -0.3
Col1a1P11087 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col1a1P11087 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Gm42913-201ENSMUST00000197936 1853 ntBASIC13.18□□□□□ -0.3
Col1a1P11087 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Prr27-202ENSMUST00000101056 1337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Prr27-201ENSMUST00000002310 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Hmox1-201ENSMUST00000005548 1569 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Col1a1P11087 Skint7-202ENSMUST00000106568 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Camk2a-204ENSMUST00000115295 979 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Cdk1-202ENSMUST00000119827 1253 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Col1a1P11087 Gm6441-201ENSMUST00000120983 696 ntBASIC13.18□□□□□ -0.3
Col1a1P11087 Mir1893-201ENSMUST00000122565 83 ntBASIC13.18□□□□□ -0.3
Col1a1P11087 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Col1a1P11087 4930533B01Rik-201ENSMUST00000123377 1029 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Gm4943-201ENSMUST00000132879 424 ntBASIC13.18□□□□□ -0.3
Col1a1P11087 C030013C21Rik-201ENSMUST00000133400 795 ntTSL 3 BASIC13.18□□□□□ -0.3
Col1a1P11087 Gm5210-201ENSMUST00000182150 1010 ntBASIC13.18□□□□□ -0.3
Col1a1P11087 Gm33707-201ENSMUST00000195135 569 ntBASIC13.18□□□□□ -0.3
Col1a1P11087 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 C230062I16Rik-203ENSMUST00000208015 648 ntTSL 3 BASIC13.18□□□□□ -0.3
Col1a1P11087 Gm45258-201ENSMUST00000210042 853 ntBASIC13.18□□□□□ -0.3
Col1a1P11087 AC154436.1-201ENSMUST00000227272 782 ntBASIC13.18□□□□□ -0.3
Col1a1P11087 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Col1a1P11087 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Col1a1P11087 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Col1a1P11087 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Thoc6-202ENSMUST00000095579 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC13.18□□□□□ -0.3
Col1a1P11087 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC13.18□□□□□ -0.3
Col1a1P11087 Lrit3-201ENSMUST00000179187 1683 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Col1a1P11087 Gm15965-201ENSMUST00000123318 1428 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
Col1a1P11087 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Col1a1P11087 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Col1a1P11087 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
Col1a1P11087 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC13.18□□□□□ -0.3
Col1a1P11087 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Col1a1P11087 Zfp286-202ENSMUST00000108705 1979 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col1a1P11087 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Col1a1P11087 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC13.17□□□□□ -0.3
Col1a1P11087 Gm5739-201ENSMUST00000208601 1703 ntBASIC13.17□□□□□ -0.3
Col1a1P11087 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Col1a1P11087 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Gm15815-201ENSMUST00000120569 255 ntBASIC13.17□□□□□ -0.3
Col1a1P11087 Gm4462-201ENSMUST00000166453 492 ntBASIC13.17□□□□□ -0.3
Col1a1P11087 4930402C01Rik-201ENSMUST00000192586 663 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Gm42732-201ENSMUST00000202887 1197 ntBASIC13.17□□□□□ -0.3
Col1a1P11087 AC134537.1-201ENSMUST00000219205 265 ntBASIC13.17□□□□□ -0.3
Col1a1P11087 AC187103.3-201ENSMUST00000225725 646 ntBASIC13.17□□□□□ -0.3
Col1a1P11087 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Cwc25-202ENSMUST00000107579 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Vcp-rs-201ENSMUST00000120233 2406 ntBASIC13.17□□□□□ -0.3
Col1a1P11087 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC13.17□□□□□ -0.3
Col1a1P11087 Gm43102-201ENSMUST00000201004 2324 ntBASIC13.17□□□□□ -0.3
Col1a1P11087 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Col1a1P11087 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
Col1a1P11087 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC13.17□□□□□ -0.3
Col1a1P11087 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
Col1a1P11087 AC122840.1-201ENSMUST00000220915 3334 ntBASIC13.17□□□□□ -0.3
Col1a1P11087 Gm13135-201ENSMUST00000117628 3121 ntBASIC13.17□□□□□ -0.3
Col1a1P11087 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col1a1P11087 Cryzl1-202ENSMUST00000114023 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col1a1P11087 Cryzl1-206ENSMUST00000124282 1187 ntTSL 5 BASIC13.16□□□□□ -0.3
Col1a1P11087 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col1a1P11087 Gm12676-201ENSMUST00000149078 808 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col1a1P11087 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC13.16□□□□□ -0.3
Col1a1P11087 Map1lc3b-205ENSMUST00000181948 766 ntTSL 2 BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms