Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Prpf40aQ9R1C7 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Prpf40aQ9R1C7 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Prpf40aQ9R1C7 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Prpf40aQ9R1C7 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Prpf40aQ9R1C7 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Prpf40aQ9R1C7 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Prpf40aQ9R1C7 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Prpf40aQ9R1C7 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
Prpf40aQ9R1C7 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Prpf40aQ9R1C7 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC22.28■■□□□ 1.16
Prpf40aQ9R1C7 Gm4430-201ENSMUST00000192413 1943 ntBASIC22.28■■□□□ 1.16
Prpf40aQ9R1C7 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Prpf40aQ9R1C7 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Prpf40aQ9R1C7 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Prpf40aQ9R1C7 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Prpf40aQ9R1C7 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC22.28■■□□□ 1.16
Prpf40aQ9R1C7 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Prpf40aQ9R1C7 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Prpf40aQ9R1C7 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Prpf40aQ9R1C7 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Prpf40aQ9R1C7 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Prpf40aQ9R1C7 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Prpf40aQ9R1C7 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Prpf40aQ9R1C7 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Prpf40aQ9R1C7 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Prpf40aQ9R1C7 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Prpf40aQ9R1C7 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Prpf40aQ9R1C7 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
Prpf40aQ9R1C7 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Prpf40aQ9R1C7 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Prpf40aQ9R1C7 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Prpf40aQ9R1C7 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Prpf40aQ9R1C7 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Prpf40aQ9R1C7 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Prpf40aQ9R1C7 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
Prpf40aQ9R1C7 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC22.25■■□□□ 1.15
Prpf40aQ9R1C7 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Prpf40aQ9R1C7 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC22.25■■□□□ 1.15
Prpf40aQ9R1C7 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Prpf40aQ9R1C7 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Prpf40aQ9R1C7 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC22.24■■□□□ 1.15
Prpf40aQ9R1C7 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Prpf40aQ9R1C7 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC22.24■■□□□ 1.15
Prpf40aQ9R1C7 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Prpf40aQ9R1C7 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Prpf40aQ9R1C7 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Prpf40aQ9R1C7 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC22.24■■□□□ 1.15
Prpf40aQ9R1C7 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Prpf40aQ9R1C7 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC22.24■■□□□ 1.15
Prpf40aQ9R1C7 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Prpf40aQ9R1C7 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Prpf40aQ9R1C7 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Prpf40aQ9R1C7 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Prpf40aQ9R1C7 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Prpf40aQ9R1C7 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Prpf40aQ9R1C7 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC22.23■■□□□ 1.15
Prpf40aQ9R1C7 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Prpf40aQ9R1C7 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Prpf40aQ9R1C7 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Prpf40aQ9R1C7 Notumos-201ENSMUST00000151998 2659 ntBASIC22.23■■□□□ 1.15
Prpf40aQ9R1C7 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Prpf40aQ9R1C7 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Prpf40aQ9R1C7 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Prpf40aQ9R1C7 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Prpf40aQ9R1C7 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Prpf40aQ9R1C7 Snhg20-203ENSMUST00000182811 2153 ntBASIC22.22■■□□□ 1.15
Prpf40aQ9R1C7 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Prpf40aQ9R1C7 Gm22238-201ENSMUST00000175222 88 ntBASIC22.21■■□□□ 1.15
Prpf40aQ9R1C7 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Prpf40aQ9R1C7 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Prpf40aQ9R1C7 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC22.21■■□□□ 1.15
Prpf40aQ9R1C7 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Prpf40aQ9R1C7 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Prpf40aQ9R1C7 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Prpf40aQ9R1C7 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Prpf40aQ9R1C7 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
Prpf40aQ9R1C7 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
Prpf40aQ9R1C7 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
Prpf40aQ9R1C7 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Prpf40aQ9R1C7 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Prpf40aQ9R1C7 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC22.2■■□□□ 1.14
Prpf40aQ9R1C7 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Prpf40aQ9R1C7 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Prpf40aQ9R1C7 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Prpf40aQ9R1C7 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Prpf40aQ9R1C7 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Prpf40aQ9R1C7 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC22.19■■□□□ 1.14
Prpf40aQ9R1C7 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Prpf40aQ9R1C7 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Prpf40aQ9R1C7 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Prpf40aQ9R1C7 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
Prpf40aQ9R1C7 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Prpf40aQ9R1C7 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Prpf40aQ9R1C7 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC22.18■■□□□ 1.14
Prpf40aQ9R1C7 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC22.18■■□□□ 1.14
Prpf40aQ9R1C7 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Prpf40aQ9R1C7 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Prpf40aQ9R1C7 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Prpf40aQ9R1C7 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms