Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Lima1Q9ERG0 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Lima1Q9ERG0 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Lima1Q9ERG0 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Lima1Q9ERG0 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Lima1Q9ERG0 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Lima1Q9ERG0 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Lima1Q9ERG0 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Lima1Q9ERG0 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.02■□□□□ 0.8
Lima1Q9ERG0 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Lima1Q9ERG0 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Lima1Q9ERG0 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Lima1Q9ERG0 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
Lima1Q9ERG0 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Lima1Q9ERG0 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Lima1Q9ERG0 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Lima1Q9ERG0 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Lima1Q9ERG0 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.01■□□□□ 0.79
Lima1Q9ERG0 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Lima1Q9ERG0 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Lima1Q9ERG0 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Lima1Q9ERG0 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Lima1Q9ERG0 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20■□□□□ 0.79
Lima1Q9ERG0 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Lima1Q9ERG0 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Lima1Q9ERG0 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Lima1Q9ERG0 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Lima1Q9ERG0 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
Lima1Q9ERG0 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Lima1Q9ERG0 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Lima1Q9ERG0 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Lima1Q9ERG0 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lima1Q9ERG0 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lima1Q9ERG0 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Lima1Q9ERG0 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lima1Q9ERG0 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lima1Q9ERG0 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lima1Q9ERG0 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lima1Q9ERG0 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lima1Q9ERG0 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lima1Q9ERG0 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Lima1Q9ERG0 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lima1Q9ERG0 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lima1Q9ERG0 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Lima1Q9ERG0 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lima1Q9ERG0 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lima1Q9ERG0 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lima1Q9ERG0 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Lima1Q9ERG0 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Lima1Q9ERG0 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Gm45444-201ENSMUST00000211394 898 ntBASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lima1Q9ERG0 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC19.96■□□□□ 0.79
Lima1Q9ERG0 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.79
Lima1Q9ERG0 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Lima1Q9ERG0 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lima1Q9ERG0 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.95■□□□□ 0.78
Lima1Q9ERG0 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lima1Q9ERG0 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lima1Q9ERG0 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.95■□□□□ 0.78
Lima1Q9ERG0 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lima1Q9ERG0 Gm5921-201ENSMUST00000075898 882 ntBASIC19.95■□□□□ 0.78
Lima1Q9ERG0 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lima1Q9ERG0 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.95■□□□□ 0.78
Lima1Q9ERG0 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lima1Q9ERG0 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lima1Q9ERG0 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC19.94■□□□□ 0.78
Lima1Q9ERG0 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lima1Q9ERG0 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Lima1Q9ERG0 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lima1Q9ERG0 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms