Protein–RNA interactions for Protein: Q91Y16

Pcdha3, Protocadherin alpha 3, mousemouse

Predictions only

Length 942 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha3Q91Y16 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha3Q91Y16 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha3Q91Y16 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha3Q91Y16 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha3Q91Y16 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha3Q91Y16 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha3Q91Y16 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha3Q91Y16 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha3Q91Y16 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha3Q91Y16 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha3Q91Y16 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Pcdha3Q91Y16 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha3Q91Y16 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha3Q91Y16 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha3Q91Y16 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha3Q91Y16 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha3Q91Y16 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha3Q91Y16 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha3Q91Y16 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha3Q91Y16 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.22■□□□□ 0.99
Pcdha3Q91Y16 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Pcdha3Q91Y16 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha3Q91Y16 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha3Q91Y16 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Pcdha3Q91Y16 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 Gm4430-201ENSMUST00000192413 1943 ntBASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha3Q91Y16 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdha3Q91Y16 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdha3Q91Y16 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdha3Q91Y16 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
Pcdha3Q91Y16 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.2■□□□□ 0.98
Pcdha3Q91Y16 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
Pcdha3Q91Y16 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha3Q91Y16 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha3Q91Y16 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha3Q91Y16 Gm12922-201ENSMUST00000120626 809 ntBASIC21.19■□□□□ 0.98
Pcdha3Q91Y16 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.19■□□□□ 0.98
Pcdha3Q91Y16 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.19■□□□□ 0.98
Pcdha3Q91Y16 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha3Q91Y16 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha3Q91Y16 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.19■□□□□ 0.98
Pcdha3Q91Y16 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Pcdha3Q91Y16 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdha3Q91Y16 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
Pcdha3Q91Y16 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Pcdha3Q91Y16 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdha3Q91Y16 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.18■□□□□ 0.98
Pcdha3Q91Y16 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Pcdha3Q91Y16 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha3Q91Y16 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha3Q91Y16 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha3Q91Y16 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Pcdha3Q91Y16 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha3Q91Y16 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha3Q91Y16 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha3Q91Y16 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Pcdha3Q91Y16 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Gm9847-201ENSMUST00000052528 599 ntBASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha3Q91Y16 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Pcdha3Q91Y16 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.98
Pcdha3Q91Y16 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdha3Q91Y16 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Pcdha3Q91Y16 Gm9870-201ENSMUST00000063874 645 ntBASIC21.14■□□□□ 0.97
Pcdha3Q91Y16 Gm13241-201ENSMUST00000094493 780 ntBASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms