Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc40Q8BI79 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ccdc40Q8BI79 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC21.06■□□□□ 0.96
Ccdc40Q8BI79 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ccdc40Q8BI79 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ccdc40Q8BI79 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Ccdc40Q8BI79 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ccdc40Q8BI79 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Ccdc40Q8BI79 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc40Q8BI79 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc40Q8BI79 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC21.05■□□□□ 0.96
Ccdc40Q8BI79 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc40Q8BI79 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc40Q8BI79 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Ccdc40Q8BI79 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc40Q8BI79 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC21.04■□□□□ 0.96
Ccdc40Q8BI79 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc40Q8BI79 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.04■□□□□ 0.96
Ccdc40Q8BI79 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Ccdc40Q8BI79 Gm5812-201ENSMUST00000061073 957 ntBASIC21.04■□□□□ 0.96
Ccdc40Q8BI79 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc40Q8BI79 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc40Q8BI79 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ccdc40Q8BI79 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC21.03■□□□□ 0.96
Ccdc40Q8BI79 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ccdc40Q8BI79 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ccdc40Q8BI79 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ccdc40Q8BI79 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc40Q8BI79 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc40Q8BI79 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc40Q8BI79 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc40Q8BI79 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc40Q8BI79 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc40Q8BI79 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc40Q8BI79 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc40Q8BI79 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc40Q8BI79 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Ccdc40Q8BI79 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc40Q8BI79 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Ccdc40Q8BI79 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Ccdc40Q8BI79 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Ccdc40Q8BI79 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc40Q8BI79 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc40Q8BI79 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc40Q8BI79 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc40Q8BI79 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Ccdc40Q8BI79 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC21.01■□□□□ 0.95
Ccdc40Q8BI79 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc40Q8BI79 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc40Q8BI79 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc40Q8BI79 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Ccdc40Q8BI79 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc40Q8BI79 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc40Q8BI79 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc40Q8BI79 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Ccdc40Q8BI79 Gm5522-201ENSMUST00000189483 1242 ntBASIC21■□□□□ 0.95
Ccdc40Q8BI79 Gm40881-201ENSMUST00000223397 166 ntBASIC21■□□□□ 0.95
Ccdc40Q8BI79 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC21■□□□□ 0.95
Ccdc40Q8BI79 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.99■□□□□ 0.95
Ccdc40Q8BI79 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc40Q8BI79 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ccdc40Q8BI79 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc40Q8BI79 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc40Q8BI79 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.98■□□□□ 0.95
Ccdc40Q8BI79 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc40Q8BI79 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc40Q8BI79 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc40Q8BI79 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ccdc40Q8BI79 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.97■□□□□ 0.95
Ccdc40Q8BI79 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc40Q8BI79 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.97■□□□□ 0.95
Ccdc40Q8BI79 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc40Q8BI79 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC20.97■□□□□ 0.95
Ccdc40Q8BI79 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC20.97■□□□□ 0.95
Ccdc40Q8BI79 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.97■□□□□ 0.95
Ccdc40Q8BI79 Gm15820-201ENSMUST00000201566 728 ntBASIC20.97■□□□□ 0.95
Ccdc40Q8BI79 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc40Q8BI79 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc40Q8BI79 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ccdc40Q8BI79 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc40Q8BI79 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.96■□□□□ 0.95
Ccdc40Q8BI79 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Ccdc40Q8BI79 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc40Q8BI79 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc40Q8BI79 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc40Q8BI79 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc40Q8BI79 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc40Q8BI79 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ccdc40Q8BI79 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc40Q8BI79 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc40Q8BI79 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Ccdc40Q8BI79 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.95■□□□□ 0.94
Ccdc40Q8BI79 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc40Q8BI79 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc40Q8BI79 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc40Q8BI79 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc40Q8BI79 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc40Q8BI79 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc40Q8BI79 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc40Q8BI79 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms