Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Limch1Q3UH68 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Limch1Q3UH68 AC122428.2-201ENSMUST00000216321 1832 ntBASIC23.91■■□□□ 1.42
Limch1Q3UH68 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Limch1Q3UH68 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Limch1Q3UH68 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Limch1Q3UH68 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Limch1Q3UH68 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Limch1Q3UH68 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Limch1Q3UH68 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC23.9■■□□□ 1.42
Limch1Q3UH68 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC23.9■■□□□ 1.42
Limch1Q3UH68 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Limch1Q3UH68 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Limch1Q3UH68 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC23.9■■□□□ 1.42
Limch1Q3UH68 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Limch1Q3UH68 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Limch1Q3UH68 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC23.89■■□□□ 1.41
Limch1Q3UH68 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Limch1Q3UH68 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Limch1Q3UH68 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.41
Limch1Q3UH68 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Limch1Q3UH68 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Limch1Q3UH68 Gm4430-201ENSMUST00000192413 1943 ntBASIC23.88■■□□□ 1.41
Limch1Q3UH68 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Limch1Q3UH68 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
Limch1Q3UH68 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
Limch1Q3UH68 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
Limch1Q3UH68 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
Limch1Q3UH68 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Limch1Q3UH68 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Limch1Q3UH68 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
Limch1Q3UH68 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Limch1Q3UH68 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Limch1Q3UH68 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Limch1Q3UH68 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
Limch1Q3UH68 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Limch1Q3UH68 AC140930.3-201ENSMUST00000222935 274 ntBASIC23.85■■□□□ 1.41
Limch1Q3UH68 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Limch1Q3UH68 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
Limch1Q3UH68 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
Limch1Q3UH68 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Limch1Q3UH68 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Limch1Q3UH68 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Limch1Q3UH68 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Limch1Q3UH68 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC23.83■■□□□ 1.41
Limch1Q3UH68 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Limch1Q3UH68 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.41
Limch1Q3UH68 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC23.83■■□□□ 1.41
Limch1Q3UH68 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC23.83■■□□□ 1.41
Limch1Q3UH68 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC23.83■■□□□ 1.41
Limch1Q3UH68 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Limch1Q3UH68 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Limch1Q3UH68 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Limch1Q3UH68 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Limch1Q3UH68 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Limch1Q3UH68 Appbp2os-202ENSMUST00000206972 447 ntBASIC23.82■■□□□ 1.4
Limch1Q3UH68 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Limch1Q3UH68 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
Limch1Q3UH68 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Limch1Q3UH68 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Limch1Q3UH68 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Limch1Q3UH68 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC23.81■■□□□ 1.4
Limch1Q3UH68 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC23.81■■□□□ 1.4
Limch1Q3UH68 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Limch1Q3UH68 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Limch1Q3UH68 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Limch1Q3UH68 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Limch1Q3UH68 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Limch1Q3UH68 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Limch1Q3UH68 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC23.8■■□□□ 1.4
Limch1Q3UH68 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Limch1Q3UH68 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Limch1Q3UH68 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC23.8■■□□□ 1.4
Limch1Q3UH68 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Limch1Q3UH68 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
Limch1Q3UH68 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Limch1Q3UH68 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 125.6 ms