Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cxcl12P40224 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC21.23■□□□□ 0.99
Cxcl12P40224 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cxcl12P40224 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cxcl12P40224 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cxcl12P40224 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC21.23■□□□□ 0.99
Cxcl12P40224 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Cxcl12P40224 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cxcl12P40224 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Cxcl12P40224 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC21.22■□□□□ 0.99
Cxcl12P40224 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cxcl12P40224 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cxcl12P40224 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cxcl12P40224 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cxcl12P40224 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Cxcl12P40224 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
Cxcl12P40224 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Cxcl12P40224 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cxcl12P40224 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Cxcl12P40224 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cxcl12P40224 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cxcl12P40224 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Cxcl12P40224 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Cxcl12P40224 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Cxcl12P40224 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cxcl12P40224 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Cxcl12P40224 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cxcl12P40224 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Cxcl12P40224 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC21.2■□□□□ 0.98
Cxcl12P40224 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cxcl12P40224 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cxcl12P40224 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cxcl12P40224 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cxcl12P40224 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cxcl12P40224 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cxcl12P40224 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Cxcl12P40224 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cxcl12P40224 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cxcl12P40224 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cxcl12P40224 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cxcl12P40224 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cxcl12P40224 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Cxcl12P40224 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cxcl12P40224 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cxcl12P40224 Gm12441-201ENSMUST00000121806 588 ntBASIC21.18■□□□□ 0.98
Cxcl12P40224 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.18■□□□□ 0.98
Cxcl12P40224 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.17■□□□□ 0.98
Cxcl12P40224 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC21.17■□□□□ 0.98
Cxcl12P40224 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC21.17■□□□□ 0.98
Cxcl12P40224 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC21.17■□□□□ 0.98
Cxcl12P40224 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.17■□□□□ 0.98
Cxcl12P40224 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.17■□□□□ 0.98
Cxcl12P40224 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cxcl12P40224 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cxcl12P40224 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cxcl12P40224 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cxcl12P40224 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cxcl12P40224 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cxcl12P40224 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Cxcl12P40224 Gm13234-201ENSMUST00000120010 747 ntBASIC21.16■□□□□ 0.98
Cxcl12P40224 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Cxcl12P40224 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cxcl12P40224 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cxcl12P40224 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cxcl12P40224 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cxcl12P40224 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cxcl12P40224 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cxcl12P40224 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cxcl12P40224 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cxcl12P40224 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cxcl12P40224 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.15■□□□□ 0.98
Cxcl12P40224 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cxcl12P40224 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cxcl12P40224 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.15■□□□□ 0.98
Cxcl12P40224 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cxcl12P40224 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cxcl12P40224 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cxcl12P40224 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
Cxcl12P40224 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cxcl12P40224 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cxcl12P40224 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Cxcl12P40224 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC21.14■□□□□ 0.97
Cxcl12P40224 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC21.14■□□□□ 0.97
Cxcl12P40224 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cxcl12P40224 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Cxcl12P40224 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Cxcl12P40224 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cxcl12P40224 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Cxcl12P40224 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Cxcl12P40224 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cxcl12P40224 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cxcl12P40224 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cxcl12P40224 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC21.13■□□□□ 0.97
Cxcl12P40224 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.13■□□□□ 0.97
Cxcl12P40224 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.12■□□□□ 0.97
Cxcl12P40224 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cxcl12P40224 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Cxcl12P40224 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC21.12■□□□□ 0.97
Cxcl12P40224 Gm10653-202ENSMUST00000139570 835 ntBASIC21.12■□□□□ 0.97
Cxcl12P40224 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms