Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Cdx1P18111 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cdx1P18111 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC16.18■□□□□ 0.18
Cdx1P18111 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cdx1P18111 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cdx1P18111 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC16.18■□□□□ 0.18
Cdx1P18111 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Cdx1P18111 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdx1P18111 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdx1P18111 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Cdx1P18111 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cdx1P18111 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdx1P18111 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdx1P18111 Gm28731-201ENSMUST00000185564 1569 ntBASIC16.17■□□□□ 0.18
Cdx1P18111 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC16.16■□□□□ 0.18
Cdx1P18111 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdx1P18111 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC16.16■□□□□ 0.18
Cdx1P18111 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC16.16■□□□□ 0.18
Cdx1P18111 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Cdx1P18111 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdx1P18111 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdx1P18111 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cdx1P18111 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Cdx1P18111 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC16.15■□□□□ 0.18
Cdx1P18111 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Cdx1P18111 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC16.15■□□□□ 0.18
Cdx1P18111 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Cdx1P18111 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Cdx1P18111 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cdx1P18111 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Cdx1P18111 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC16.15■□□□□ 0.18
Cdx1P18111 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Cdx1P18111 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Cdx1P18111 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Cdx1P18111 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.18
Cdx1P18111 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cdx1P18111 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cdx1P18111 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Cdx1P18111 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC16.14■□□□□ 0.17
Cdx1P18111 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Cdx1P18111 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Cdx1P18111 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cdx1P18111 Gm43566-201ENSMUST00000196851 808 ntBASIC16.14■□□□□ 0.17
Cdx1P18111 Nsd1-203ENSMUST00000224156 1149 ntBASIC16.14■□□□□ 0.17
Cdx1P18111 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cdx1P18111 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Cdx1P18111 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Cdx1P18111 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Cdx1P18111 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cdx1P18111 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Cdx1P18111 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cdx1P18111 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Cdx1P18111 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Cdx1P18111 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdx1P18111 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdx1P18111 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdx1P18111 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdx1P18111 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdx1P18111 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdx1P18111 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdx1P18111 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdx1P18111 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdx1P18111 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdx1P18111 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC16.12■□□□□ 0.17
Cdx1P18111 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdx1P18111 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
Cdx1P18111 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdx1P18111 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC16.12■□□□□ 0.17
Cdx1P18111 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC16.12■□□□□ 0.17
Cdx1P18111 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdx1P18111 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdx1P18111 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdx1P18111 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Cdx1P18111 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdx1P18111 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdx1P18111 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdx1P18111 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdx1P18111 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC16.11■□□□□ 0.17
Cdx1P18111 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Cdx1P18111 Gm45444-201ENSMUST00000211394 898 ntBASIC16.11■□□□□ 0.17
Cdx1P18111 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC16.11■□□□□ 0.17
Cdx1P18111 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdx1P18111 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdx1P18111 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdx1P18111 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cdx1P18111 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdx1P18111 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdx1P18111 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdx1P18111 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms