Protein–RNA interactions for Protein: O88705

Hcn3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, mousemouse

Predictions only

Length 779 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hcn3O88705 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hcn3O88705 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Hcn3O88705 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hcn3O88705 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hcn3O88705 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hcn3O88705 Gm10420-201ENSMUST00000121713 882 ntBASIC19.43■□□□□ 0.7
Hcn3O88705 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC19.43■□□□□ 0.7
Hcn3O88705 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hcn3O88705 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hcn3O88705 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.43■□□□□ 0.7
Hcn3O88705 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Hcn3O88705 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hcn3O88705 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hcn3O88705 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.42■□□□□ 0.7
Hcn3O88705 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hcn3O88705 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.42■□□□□ 0.7
Hcn3O88705 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Hcn3O88705 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hcn3O88705 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.41■□□□□ 0.7
Hcn3O88705 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.41■□□□□ 0.7
Hcn3O88705 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hcn3O88705 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hcn3O88705 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC19.41■□□□□ 0.7
Hcn3O88705 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.41■□□□□ 0.7
Hcn3O88705 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hcn3O88705 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hcn3O88705 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.41■□□□□ 0.7
Hcn3O88705 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Hcn3O88705 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Hcn3O88705 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Hcn3O88705 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Hcn3O88705 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Hcn3O88705 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC19.4■□□□□ 0.7
Hcn3O88705 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hcn3O88705 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Hcn3O88705 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hcn3O88705 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.39■□□□□ 0.7
Hcn3O88705 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hcn3O88705 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hcn3O88705 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hcn3O88705 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Hcn3O88705 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Hcn3O88705 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
Hcn3O88705 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Hcn3O88705 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hcn3O88705 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Hcn3O88705 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hcn3O88705 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hcn3O88705 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hcn3O88705 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hcn3O88705 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
Hcn3O88705 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hcn3O88705 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.38■□□□□ 0.69
Hcn3O88705 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hcn3O88705 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hcn3O88705 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Hcn3O88705 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hcn3O88705 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hcn3O88705 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hcn3O88705 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hcn3O88705 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Hcn3O88705 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hcn3O88705 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hcn3O88705 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Hcn3O88705 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hcn3O88705 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hcn3O88705 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hcn3O88705 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hcn3O88705 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hcn3O88705 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hcn3O88705 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hcn3O88705 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hcn3O88705 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hcn3O88705 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hcn3O88705 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hcn3O88705 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.35■□□□□ 0.69
Hcn3O88705 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.35■□□□□ 0.69
Hcn3O88705 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hcn3O88705 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.35■□□□□ 0.69
Hcn3O88705 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hcn3O88705 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hcn3O88705 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hcn3O88705 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hcn3O88705 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hcn3O88705 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hcn3O88705 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hcn3O88705 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hcn3O88705 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hcn3O88705 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Hcn3O88705 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hcn3O88705 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Hcn3O88705 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Hcn3O88705 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hcn3O88705 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Hcn3O88705 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Hcn3O88705 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Hcn3O88705 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hcn3O88705 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hcn3O88705 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hcn3O88705 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms