Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk3O35492 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk3O35492 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.24■□□□□ 0.67
Clk3O35492 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk3O35492 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk3O35492 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk3O35492 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk3O35492 Gm15043-201ENSMUST00000118843 1543 ntBASIC19.24■□□□□ 0.67
Clk3O35492 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk3O35492 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk3O35492 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Clk3O35492 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk3O35492 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk3O35492 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Clk3O35492 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk3O35492 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Clk3O35492 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.23■□□□□ 0.67
Clk3O35492 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk3O35492 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk3O35492 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Clk3O35492 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Clk3O35492 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Clk3O35492 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Clk3O35492 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk3O35492 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.22■□□□□ 0.67
Clk3O35492 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk3O35492 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk3O35492 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Clk3O35492 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Clk3O35492 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Clk3O35492 Gm44949-201ENSMUST00000206423 1450 ntBASIC19.22■□□□□ 0.67
Clk3O35492 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clk3O35492 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Clk3O35492 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.21■□□□□ 0.67
Clk3O35492 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.21■□□□□ 0.67
Clk3O35492 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.21■□□□□ 0.67
Clk3O35492 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clk3O35492 Golph3-202ENSMUST00000226517 2359 ntBASIC19.21■□□□□ 0.67
Clk3O35492 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clk3O35492 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clk3O35492 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Clk3O35492 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clk3O35492 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Clk3O35492 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clk3O35492 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Clk3O35492 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clk3O35492 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clk3O35492 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clk3O35492 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clk3O35492 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clk3O35492 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Clk3O35492 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk3O35492 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk3O35492 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Clk3O35492 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk3O35492 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk3O35492 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk3O35492 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk3O35492 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Clk3O35492 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk3O35492 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk3O35492 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk3O35492 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk3O35492 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.18■□□□□ 0.66
Clk3O35492 Gm10399-202ENSMUST00000202768 748 ntBASIC19.18■□□□□ 0.66
Clk3O35492 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk3O35492 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk3O35492 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Clk3O35492 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.18■□□□□ 0.66
Clk3O35492 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk3O35492 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk3O35492 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk3O35492 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk3O35492 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.18■□□□□ 0.66
Clk3O35492 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clk3O35492 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Clk3O35492 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clk3O35492 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.17■□□□□ 0.66
Clk3O35492 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.17■□□□□ 0.66
Clk3O35492 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clk3O35492 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.17■□□□□ 0.66
Clk3O35492 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Clk3O35492 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.17■□□□□ 0.66
Clk3O35492 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clk3O35492 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clk3O35492 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clk3O35492 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clk3O35492 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clk3O35492 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clk3O35492 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clk3O35492 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clk3O35492 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Clk3O35492 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Clk3O35492 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clk3O35492 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clk3O35492 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Clk3O35492 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Clk3O35492 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
Clk3O35492 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Clk3O35492 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms