Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trbv3A0A0A6YYE2 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Trbv3A0A0A6YYE2 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trbv3A0A0A6YYE2 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trbv3A0A0A6YYE2 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv3A0A0A6YYE2 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv3A0A0A6YYE2 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Trbv3A0A0A6YYE2 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv3A0A0A6YYE2 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv3A0A0A6YYE2 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv3A0A0A6YYE2 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv3A0A0A6YYE2 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv3A0A0A6YYE2 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trbv3A0A0A6YYE2 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 AC167019.3-201ENSMUST00000228225 1266 ntBASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trbv3A0A0A6YYE2 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv3A0A0A6YYE2 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv3A0A0A6YYE2 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trbv3A0A0A6YYE2 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC15.67■□□□□ 0.1
Trbv3A0A0A6YYE2 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv3A0A0A6YYE2 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv3A0A0A6YYE2 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv3A0A0A6YYE2 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trbv3A0A0A6YYE2 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC15.67■□□□□ 0.1
Trbv3A0A0A6YYE2 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv3A0A0A6YYE2 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Trbv3A0A0A6YYE2 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv3A0A0A6YYE2 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv3A0A0A6YYE2 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv3A0A0A6YYE2 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trbv3A0A0A6YYE2 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Trbv3A0A0A6YYE2 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
Trbv3A0A0A6YYE2 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv3A0A0A6YYE2 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC15.65■□□□□ 0.1
Trbv3A0A0A6YYE2 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv3A0A0A6YYE2 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv3A0A0A6YYE2 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv3A0A0A6YYE2 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Trbv3A0A0A6YYE2 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv3A0A0A6YYE2 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trbv3A0A0A6YYE2 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv3A0A0A6YYE2 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv3A0A0A6YYE2 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv3A0A0A6YYE2 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Trbv3A0A0A6YYE2 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv3A0A0A6YYE2 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trbv3A0A0A6YYE2 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC15.63■□□□□ 0.09
Trbv3A0A0A6YYE2 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv3A0A0A6YYE2 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv3A0A0A6YYE2 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv3A0A0A6YYE2 Gm7432-201ENSMUST00000210343 879 ntBASIC15.63■□□□□ 0.09
Trbv3A0A0A6YYE2 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC15.63■□□□□ 0.09
Trbv3A0A0A6YYE2 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv3A0A0A6YYE2 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv3A0A0A6YYE2 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trbv3A0A0A6YYE2 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Trbv3A0A0A6YYE2 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC15.62■□□□□ 0.09
Trbv3A0A0A6YYE2 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Trbv3A0A0A6YYE2 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv3A0A0A6YYE2 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv3A0A0A6YYE2 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv3A0A0A6YYE2 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv3A0A0A6YYE2 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv3A0A0A6YYE2 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv3A0A0A6YYE2 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv3A0A0A6YYE2 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trbv3A0A0A6YYE2 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC15.62■□□□□ 0.09
Trbv3A0A0A6YYE2 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trbv3A0A0A6YYE2 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trbv3A0A0A6YYE2 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trbv3A0A0A6YYE2 Gm11599-201ENSMUST00000118720 878 ntBASIC15.61■□□□□ 0.09
Trbv3A0A0A6YYE2 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trbv3A0A0A6YYE2 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trbv3A0A0A6YYE2 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv3A0A0A6YYE2 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv3A0A0A6YYE2 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv3A0A0A6YYE2 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms