Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 AC113082.1-201ENSMUST00000217324 327 ntBASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Snx31-203ENSMUST00000161202 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 B3galt5-201ENSMUST00000099497 5147 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Pdp2-201ENSMUST00000059588 5692 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Syt11-203ENSMUST00000107505 5020 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm12165-201ENSMUST00000117047 342 ntBASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm19353-201ENSMUST00000184561 445 ntBASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm37986-201ENSMUST00000193285 383 ntBASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm38314-201ENSMUST00000195709 625 ntBASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm6905-201ENSMUST00000205729 511 ntBASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 CT010486.3-201ENSMUST00000224555 811 ntBASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm1821-202ENSMUST00000227415 750 ntBASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm38140-201ENSMUST00000193617 2755 ntBASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Gm26846-201ENSMUST00000181865 4869 ntTSL 5 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Pdgfrb-201ENSMUST00000025522 5407 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Trim3Q9R1R2 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Gm21939-201ENSMUST00000221137 2773 ntBASIC10.72□□□□□ -0.69
Trim3Q9R1R2 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Rbbp5-202ENSMUST00000187505 1977 ntTSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Zfp236-202ENSMUST00000182122 6059 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Cep250-204ENSMUST00000109619 7977 ntAPPRIS P4 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Cep250-201ENSMUST00000039994 7979 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Myh13-201ENSMUST00000081911 5817 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Gm15207-201ENSMUST00000119259 442 ntBASIC10.72□□□□□ -0.69
Trim3Q9R1R2 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Gm8815-201ENSMUST00000173809 620 ntBASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Gm37246-201ENSMUST00000192665 835 ntBASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Gm38117-201ENSMUST00000194653 939 ntBASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Gm45575-201ENSMUST00000210283 548 ntBASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Ntng1-201ENSMUST00000051253 327 ntBASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 73.9 ms