Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Gm5778-201ENSMUST00000171003 1072 ntBASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Gm45219-201ENSMUST00000205602 465 ntBASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Gm9463-201ENSMUST00000206707 601 ntBASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Gm45550-201ENSMUST00000209380 946 ntBASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Gm7940-201ENSMUST00000218195 769 ntBASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Gm18065-201ENSMUST00000221395 526 ntBASIC10.61□□□□□ -0.71
Cdc40Q9DC48 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Arhgef10-202ENSMUST00000110800 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Ube3a-203ENSMUST00000200758 9856 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Gm2128-201ENSMUST00000108009 2560 ntBASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 G6pdx-201ENSMUST00000004327 2652 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdc40Q9DC48 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Mcf2l-217ENSMUST00000145067 5313 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Kalrn-202ENSMUST00000089655 6506 ntTSL 5 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Gm13910-201ENSMUST00000121752 1428 ntBASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Gm38273-201ENSMUST00000194987 2382 ntBASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Tom1l2-206ENSMUST00000102683 4999 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Gm15782-201ENSMUST00000121073 445 ntBASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC10.6□□□□□ -0.71
Cdc40Q9DC48 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Mir8093-201ENSMUST00000185043 137 ntBASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Zbtb21-201ENSMUST00000052089 5410 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Gm38376-201ENSMUST00000195493 2253 ntBASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Atxn1-201ENSMUST00000091628 10569 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Map4-204ENSMUST00000164930 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Vmn1r184-207ENSMUST00000228369 6361 ntAPPRIS P1 BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Wnk1-204ENSMUST00000088646 8364 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Lama4-201ENSMUST00000019992 6046 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdc40Q9DC48 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 Sptb-202ENSMUST00000166101 8084 ntAPPRIS ALT2 TSL 5 BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Cdc40Q9DC48 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms