Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Fmr1nb-203ENSMUST00000114647 679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Gm12986-201ENSMUST00000119037 967 ntBASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Gm13572-201ENSMUST00000153675 559 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 A230006K03Rik-202ENSMUST00000154958 901 ntTSL 5 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Gm17221-201ENSMUST00000163909 481 ntBASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Gm17073-201ENSMUST00000168069 556 ntBASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Nudt2-201ENSMUST00000030154 845 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Olfr525-201ENSMUST00000078103 1050 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Ccdc78-201ENSMUST00000095500 1651 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Gm43174-201ENSMUST00000195914 2445 ntBASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Usp40Q8BWR4 Gm5641-201ENSMUST00000091130 1488 ntBASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Gm10614-201ENSMUST00000181414 2538 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Gm14234-201ENSMUST00000119539 845 ntBASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Gm5257-201ENSMUST00000121823 790 ntBASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Txnrd2-205ENSMUST00000126778 491 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Mrgpra2a-201ENSMUST00000159004 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Gm17070-201ENSMUST00000170463 784 ntBASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Gm34379-201ENSMUST00000195036 290 ntBASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Gm42430-201ENSMUST00000197209 616 ntBASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Gm42660-201ENSMUST00000197733 947 ntBASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Gm18035-201ENSMUST00000211962 589 ntBASIC15.52■□□□□ 0.08
Usp40Q8BWR4 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Usp40Q8BWR4 Zfp286-202ENSMUST00000108705 1979 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Usp40Q8BWR4 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC15.52■□□□□ 0.07
Usp40Q8BWR4 Alox5-207ENSMUST00000170186 1929 ntTSL 5 BASIC15.52■□□□□ 0.07
Usp40Q8BWR4 D430013B06Rik-201ENSMUST00000192922 1872 ntBASIC15.52■□□□□ 0.07
Usp40Q8BWR4 Aldoa-201ENSMUST00000032934 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Usp40Q8BWR4 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC15.52■□□□□ 0.07
Usp40Q8BWR4 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Usp40Q8BWR4 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Usp40Q8BWR4 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Usp40Q8BWR4 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Usp40Q8BWR4 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Usp40Q8BWR4 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Usp40Q8BWR4 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Zfp872-201ENSMUST00000091508 1395 ntTSL 5 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm14993-201ENSMUST00000121180 164 ntBASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Ubl5-211ENSMUST00000162303 505 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm17214-201ENSMUST00000164501 541 ntBASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Pax4-202ENSMUST00000164519 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Pax4-203ENSMUST00000171089 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm20414-201ENSMUST00000172918 646 ntBASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm24328-201ENSMUST00000175104 67 ntBASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm19927-201ENSMUST00000185792 781 ntBASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Gm18204-201ENSMUST00000209835 793 ntBASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Cast-212ENSMUST00000223309 1529 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Ppp2r2cos-201ENSMUST00000152862 1491 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Usp40Q8BWR4 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms