Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Cux1P53564 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Dmrtc1b-201ENSMUST00000101324 1200 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Gm23595-201ENSMUST00000104306 130 ntBASIC17.24■□□□□ 0.35
Cux1P53564 Srp14-202ENSMUST00000110862 587 ntTSL 2 BASIC17.24■□□□□ 0.35
Cux1P53564 Dmrtc1b-202ENSMUST00000113609 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Gm12136-201ENSMUST00000120460 1209 ntBASIC17.24■□□□□ 0.35
Cux1P53564 Gm13709-201ENSMUST00000138573 614 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Gm17226-201ENSMUST00000166637 780 ntTSL 3 BASIC17.24■□□□□ 0.35
Cux1P53564 Gm17796-201ENSMUST00000189015 1213 ntBASIC17.24■□□□□ 0.35
Cux1P53564 Mrgprb7-ps-201ENSMUST00000190238 964 ntBASIC17.24■□□□□ 0.35
Cux1P53564 Gm18555-201ENSMUST00000197935 584 ntBASIC17.24■□□□□ 0.35
Cux1P53564 Ywhaq-ps1-201ENSMUST00000206623 710 ntBASIC17.24■□□□□ 0.35
Cux1P53564 Ms4a7-202ENSMUST00000056035 882 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Tprg-201ENSMUST00000056087 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Olfr669-201ENSMUST00000098164 954 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Cux1P53564 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Cux1P53564 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Cux1P53564 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Gm17141-201ENSMUST00000167578 3148 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Agbl4-202ENSMUST00000097920 1798 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Gm42858-201ENSMUST00000202512 1704 ntBASIC17.23■□□□□ 0.35
Cux1P53564 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cux1P53564 B430203G13Rik-201ENSMUST00000169657 1375 ntBASIC17.23■□□□□ 0.35
Cux1P53564 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cux1P53564 Gm5766-201ENSMUST00000160520 1977 ntBASIC17.23■□□□□ 0.35
Cux1P53564 Olfr434-203ENSMUST00000216562 1318 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Cux1P53564 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cux1P53564 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cux1P53564 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Cux1P53564 Sh3gl2-202ENSMUST00000107184 671 ntTSL 2 BASIC17.23■□□□□ 0.35
Cux1P53564 1700025C18Rik-201ENSMUST00000109304 702 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cux1P53564 Mapk8-202ENSMUST00000111942 927 ntTSL 5 BASIC17.23■□□□□ 0.35
Cux1P53564 Gm15031-201ENSMUST00000121341 210 ntBASIC17.23■□□□□ 0.35
Cux1P53564 Tstd1-201ENSMUST00000171362 551 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Cux1P53564 Tcstv1-201ENSMUST00000178510 1280 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Cux1P53564 Gm16619-201ENSMUST00000181817 1210 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cux1P53564 Gm5254-201ENSMUST00000188353 977 ntBASIC17.23■□□□□ 0.35
Cux1P53564 Gm37257-201ENSMUST00000194871 717 ntTSL 5 BASIC17.23■□□□□ 0.35
Cux1P53564 3930402G23Rik-202ENSMUST00000208615 581 ntTSL 3 BASIC17.23■□□□□ 0.35
Cux1P53564 Gm8162-201ENSMUST00000213951 665 ntBASIC17.23■□□□□ 0.35
Cux1P53564 Nsmce2-203ENSMUST00000227173 1122 ntBASIC17.23■□□□□ 0.35
Cux1P53564 Prok2-201ENSMUST00000008273 594 ntTSL 3 BASIC17.23■□□□□ 0.35
Cux1P53564 Gm10228-201ENSMUST00000089105 532 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Cux1P53564 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cux1P53564 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cux1P53564 4921507G05Rik-201ENSMUST00000181348 1653 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cux1P53564 Gm5159-201ENSMUST00000212733 1652 ntBASIC17.23■□□□□ 0.35
Cux1P53564 Csde1-207ENSMUST00000197827 2671 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
Cux1P53564 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC17.23■□□□□ 0.35
Cux1P53564 Gm26908-201ENSMUST00000181856 1637 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cux1P53564 AC151836.1-201ENSMUST00000228730 1637 ntBASIC17.23■□□□□ 0.35
Cux1P53564 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cux1P53564 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC17.22■□□□□ 0.35
Cux1P53564 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Msl1-202ENSMUST00000037930 1303 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Erich3-203ENSMUST00000189969 3460 ntBASIC17.22■□□□□ 0.35
Cux1P53564 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC17.22■□□□□ 0.35
Cux1P53564 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Gm24933-201ENSMUST00000103762 110 ntBASIC17.22■□□□□ 0.35
Cux1P53564 Gm23252-201ENSMUST00000103776 110 ntBASIC17.22■□□□□ 0.35
Cux1P53564 Tmem91-203ENSMUST00000108405 550 ntTSL 3 BASIC17.22■□□□□ 0.35
Cux1P53564 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC17.22■□□□□ 0.35
Cux1P53564 Gm6630-201ENSMUST00000119199 454 ntBASIC17.22■□□□□ 0.35
Cux1P53564 H2afb3-201ENSMUST00000122050 348 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Cux1P53564 Gm5808-201ENSMUST00000178090 357 ntBASIC17.22■□□□□ 0.35
Cux1P53564 Gm26443-201ENSMUST00000179610 110 ntBASIC17.22■□□□□ 0.35
Cux1P53564 Mir6953-201ENSMUST00000184745 68 ntBASIC17.22■□□□□ 0.35
Cux1P53564 Gm2345-201ENSMUST00000193451 589 ntBASIC17.22■□□□□ 0.35
Cux1P53564 Gm43667-201ENSMUST00000198616 1095 ntBASIC17.22■□□□□ 0.35
Cux1P53564 4930486N12Rik-201ENSMUST00000206668 632 ntBASIC17.22■□□□□ 0.35
Cux1P53564 Gm4930-201ENSMUST00000219926 1087 ntBASIC17.22■□□□□ 0.35
Cux1P53564 BX649293.1-201ENSMUST00000227437 631 ntBASIC17.22■□□□□ 0.35
Cux1P53564 Tbc1d21-201ENSMUST00000040217 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Krtap3-3-201ENSMUST00000092700 736 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Cux1P53564 Gm8420-201ENSMUST00000097103 598 ntBASIC17.22■□□□□ 0.35
Cux1P53564 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Etv1-205ENSMUST00000160856 1474 ntTSL 5 BASIC17.22■□□□□ 0.35
Cux1P53564 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Cux1P53564 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Cux1P53564 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC17.22■□□□□ 0.35
Cux1P53564 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Cux1P53564 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Ptprm-203ENSMUST00000224091 3773 ntBASIC17.22■□□□□ 0.35
Cux1P53564 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cux1P53564 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms