Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
RaraP11416 Fam83a-202ENSMUST00000160942 2876 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
RaraP11416 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
RaraP11416 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
RaraP11416 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC12.3□□□□□ -0.44
RaraP11416 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
RaraP11416 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
RaraP11416 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Gm10548-201ENSMUST00000097631 2629 ntBASIC12.3□□□□□ -0.44
RaraP11416 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC12.3□□□□□ -0.44
RaraP11416 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
RaraP11416 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
RaraP11416 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
RaraP11416 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
RaraP11416 Tcf7l2-206ENSMUST00000111652 1041 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Gm5380-201ENSMUST00000119296 2136 ntBASIC12.3□□□□□ -0.44
RaraP11416 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
RaraP11416 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
RaraP11416 H2-Q3-201ENSMUST00000172583 608 ntBASIC12.3□□□□□ -0.44
RaraP11416 Gm5342-201ENSMUST00000181982 1003 ntBASIC12.3□□□□□ -0.44
RaraP11416 Gm8100-201ENSMUST00000182906 988 ntBASIC12.3□□□□□ -0.44
RaraP11416 Uba52-ps-201ENSMUST00000183770 379 ntBASIC12.3□□□□□ -0.44
RaraP11416 Gm21868-201ENSMUST00000185623 1230 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Gm20803-202ENSMUST00000190968 1230 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
RaraP11416 Gm2965-201ENSMUST00000198365 343 ntBASIC12.3□□□□□ -0.44
RaraP11416 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC12.3□□□□□ -0.44
RaraP11416 Gm9353-201ENSMUST00000200472 604 ntBASIC12.3□□□□□ -0.44
RaraP11416 2900076G11Rik-201ENSMUST00000202297 631 ntBASIC12.3□□□□□ -0.44
RaraP11416 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC12.3□□□□□ -0.44
RaraP11416 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Gm26540-201ENSMUST00000181858 1310 ntTSL 5 BASIC12.3□□□□□ -0.44
RaraP11416 Man2b2-201ENSMUST00000031002 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Camk1g-201ENSMUST00000016323 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Nudt13-207ENSMUST00000224311 1574 ntBASIC12.3□□□□□ -0.44
RaraP11416 Shc1-210ENSMUST00000191485 3154 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RaraP11416 AC155245.1-201ENSMUST00000222266 1804 ntBASIC12.3□□□□□ -0.44
RaraP11416 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
RaraP11416 Gm37031-201ENSMUST00000195487 2530 ntBASIC12.3□□□□□ -0.44
RaraP11416 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
RaraP11416 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 1500012K07Rik-201ENSMUST00000181846 2345 ntTSL 5 BASIC12.29□□□□□ -0.44
RaraP11416 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Ccdc96-201ENSMUST00000060100 3585 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
RaraP11416 Gm43937-201ENSMUST00000204640 3122 ntBASIC12.29□□□□□ -0.44
RaraP11416 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC12.29□□□□□ -0.44
RaraP11416 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
RaraP11416 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC12.29□□□□□ -0.44
RaraP11416 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC12.29□□□□□ -0.44
RaraP11416 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 B430010I23Rik-202ENSMUST00000152188 1168 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC12.29□□□□□ -0.44
RaraP11416 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC12.29□□□□□ -0.44
RaraP11416 Gm19331-201ENSMUST00000193799 1092 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Klk1b19-ps-201ENSMUST00000205322 696 ntBASIC12.29□□□□□ -0.44
RaraP11416 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
RaraP11416 AC156501.1-201ENSMUST00000228219 270 ntBASIC12.29□□□□□ -0.44
RaraP11416 AC164437.3-201ENSMUST00000228323 347 ntBASIC12.29□□□□□ -0.44
RaraP11416 AC135114.1-201ENSMUST00000228682 270 ntBASIC12.29□□□□□ -0.44
RaraP11416 Mir219a-1-201ENSMUST00000083621 110 ntBASIC12.29□□□□□ -0.44
RaraP11416 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
RaraP11416 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
RaraP11416 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RaraP11416 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
RaraP11416 AC174797.1-201ENSMUST00000224339 1649 ntBASIC12.29□□□□□ -0.44
RaraP11416 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC12.29□□□□□ -0.44
RaraP11416 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC12.28□□□□□ -0.44
RaraP11416 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RaraP11416 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 69.3 ms