Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm5420-201ENSMUST00000071008 2206 ntTSL 2 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm13398-201ENSMUST00000149378 2837 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gpc6-202ENSMUST00000088483 3488 ntAPPRIS P3 TSL 5 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Pomt1-201ENSMUST00000036473 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Lsamp-201ENSMUST00000078873 2951 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm26286-201ENSMUST00000104166 134 ntBASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm12715-201ENSMUST00000121430 1128 ntBASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Ighv1-62-201ENSMUST00000193406 350 ntBASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm6082-201ENSMUST00000215204 454 ntBASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Vstm2a-201ENSMUST00000109645 3264 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Sphk2-202ENSMUST00000107737 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Dclk3-201ENSMUST00000111879 3005 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Tia1-206ENSMUST00000113713 3108 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Zfp114-203ENSMUST00000206547 3154 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Plpp3-201ENSMUST00000064139 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Mtss1l-205ENSMUST00000144041 3225 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 A930016O22Rik-202ENSMUST00000208685 2349 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Gm35021-201ENSMUST00000210105 2329 ntTSL 5 BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Gm26361-201ENSMUST00000158868 186 ntBASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 AC125070.1-201ENSMUST00000223523 555 ntTSL 5 BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Fhdc1-201ENSMUST00000091002 4162 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Txlna-201ENSMUST00000046425 4569 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Anks1b-218ENSMUST00000182595 3715 ntTSL 5 BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Prorsd1-202ENSMUST00000133103 2126 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Scaf1-201ENSMUST00000085383 4293 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lima1Q9ERG0 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Rnf40-206ENSMUST00000206914 3735 ntTSL 5 BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Scyl2-204ENSMUST00000174252 4817 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Gm13996-201ENSMUST00000118456 430 ntBASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Gm15004-201ENSMUST00000119192 630 ntBASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Gm18798-201ENSMUST00000187264 1700 ntBASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Ighv5-7-201ENSMUST00000192302 244 ntBASIC11.22□□□□□ -0.61
Lima1Q9ERG0 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 77.6 ms