Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gm5740-201ENSMUST00000211003 1857 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 AC167022.1-201ENSMUST00000218647 1458 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 AC124397.2-201ENSMUST00000225575 2215 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Rab3c-202ENSMUST00000223922 2398 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gm45776-201ENSMUST00000212366 1522 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gm22877-201ENSMUST00000175451 105 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gm9135-201ENSMUST00000182963 990 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gm43163-201ENSMUST00000196571 442 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 AC154184.3-201ENSMUST00000225620 1090 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Gm5805-201ENSMUST00000072779 456 ntBASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sf3b1Q99NB9 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm8899-201ENSMUST00000214635 1332 ntBASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm14270-201ENSMUST00000118388 846 ntBASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm17798-201ENSMUST00000182282 1035 ntBASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm45410-201ENSMUST00000211331 1093 ntBASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 AC164618.2-201ENSMUST00000224770 573 ntBASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sf3b1Q99NB9 Gm43102-201ENSMUST00000201004 2324 ntBASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms