Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Scrt1Q99M85 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Scrt1Q99M85 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Scrt1Q99M85 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Scrt1Q99M85 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Scrt1Q99M85 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Scrt1Q99M85 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Scrt1Q99M85 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Scrt1Q99M85 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Scrt1Q99M85 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Scrt1Q99M85 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Scrt1Q99M85 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm11470-201ENSMUST00000118868 1475 ntBASIC10.04□□□□□ -0.8
Scrt1Q99M85 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm19680-201ENSMUST00000095050 1513 ntBASIC10.04□□□□□ -0.8
Scrt1Q99M85 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC10.04□□□□□ -0.8
Scrt1Q99M85 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm12218-201ENSMUST00000117666 399 ntBASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm14213-201ENSMUST00000119778 768 ntBASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm22146-201ENSMUST00000157397 288 ntBASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm44647-201ENSMUST00000207402 428 ntBASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm45856-201ENSMUST00000212752 416 ntBASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm18968-201ENSMUST00000221319 862 ntBASIC10.04□□□□□ -0.8
Scrt1Q99M85 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 AC154361.2-201ENSMUST00000224747 943 ntBASIC10.04□□□□□ -0.8
Scrt1Q99M85 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Rasl11a-201ENSMUST00000031646 1126 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Olfr584-201ENSMUST00000098210 964 ntBASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Scrt1Q99M85 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Gm23272-201ENSMUST00000104053 129 ntBASIC10.03□□□□□ -0.8
Scrt1Q99M85 Gm24791-201ENSMUST00000104284 131 ntBASIC10.03□□□□□ -0.8
Scrt1Q99M85 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Gm14274-201ENSMUST00000117182 615 ntBASIC10.03□□□□□ -0.8
Scrt1Q99M85 Gm13019-201ENSMUST00000120000 276 ntBASIC10.03□□□□□ -0.8
Scrt1Q99M85 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
Scrt1Q99M85 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Scrt1Q99M85 Gm37826-201ENSMUST00000195329 322 ntBASIC10.03□□□□□ -0.8
Scrt1Q99M85 Gm3726-201ENSMUST00000203110 785 ntBASIC10.03□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms