Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Brf1Q8CFK2 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Brf1Q8CFK2 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Brf1Q8CFK2 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC13.73□□□□□ -0.21
Brf1Q8CFK2 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Brf1Q8CFK2 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Brf1Q8CFK2 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Brf1Q8CFK2 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Brf1Q8CFK2 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Brf1Q8CFK2 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Brf1Q8CFK2 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC13.73□□□□□ -0.21
Brf1Q8CFK2 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC13.73□□□□□ -0.21
Brf1Q8CFK2 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Gm23272-201ENSMUST00000104053 129 ntBASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Gm14740-201ENSMUST00000118538 1150 ntBASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Gm25492-201ENSMUST00000157383 129 ntBASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Gm23694-201ENSMUST00000179335 110 ntBASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Gm10731-201ENSMUST00000181171 448 ntBASIC13.72□□□□□ -0.21
Brf1Q8CFK2 AC166992.1-201ENSMUST00000216356 565 ntBASIC13.72□□□□□ -0.21
Brf1Q8CFK2 AC129219.2-201ENSMUST00000224324 701 ntBASIC13.72□□□□□ -0.21
Brf1Q8CFK2 CT025602.2-201ENSMUST00000226553 772 ntBASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Brf1Q8CFK2 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Gm25076-201ENSMUST00000104098 132 ntBASIC13.71□□□□□ -0.21
Brf1Q8CFK2 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Gm8546-201ENSMUST00000178288 1264 ntBASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Gm21778-201ENSMUST00000178779 471 ntBASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Gm9132-201ENSMUST00000210182 832 ntBASIC13.71□□□□□ -0.21
Brf1Q8CFK2 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Nsd1-205ENSMUST00000224693 852 ntBASIC13.71□□□□□ -0.21
Brf1Q8CFK2 AC159002.1-201ENSMUST00000226714 924 ntBASIC13.71□□□□□ -0.21
Brf1Q8CFK2 AC171241.1-201ENSMUST00000228144 1166 ntBASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Brf1Q8CFK2 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Brf1Q8CFK2 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Brf1Q8CFK2 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Brf1Q8CFK2 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Brf1Q8CFK2 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Brf1Q8CFK2 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Brf1Q8CFK2 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Brf1Q8CFK2 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Brf1Q8CFK2 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Brf1Q8CFK2 Gm43081-201ENSMUST00000199082 1380 ntBASIC13.71□□□□□ -0.22
Brf1Q8CFK2 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Brf1Q8CFK2 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Brf1Q8CFK2 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC13.7□□□□□ -0.22
Brf1Q8CFK2 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms