Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Gm12241-201ENSMUST00000118330 726 ntBASIC10.88□□□□□ -0.67
Nr1h4Q60641 Adgrl3-217ENSMUST00000121707 6690 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Carns1-201ENSMUST00000167055 3968 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Gm34767-201ENSMUST00000191813 1062 ntBASIC10.88□□□□□ -0.67
Nr1h4Q60641 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Gm37122-201ENSMUST00000195313 1567 ntBASIC10.88□□□□□ -0.67
Nr1h4Q60641 Aprt-ps-201ENSMUST00000212311 505 ntBASIC10.88□□□□□ -0.67
Nr1h4Q60641 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 AC129336.2-201ENSMUST00000218053 3086 ntBASIC10.88□□□□□ -0.67
Nr1h4Q60641 AC160929.1-201ENSMUST00000221247 415 ntBASIC10.88□□□□□ -0.67
Nr1h4Q60641 AC161537.1-201ENSMUST00000226199 1015 ntBASIC10.88□□□□□ -0.67
Nr1h4Q60641 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Gm9823-201ENSMUST00000051212 327 ntBASIC10.88□□□□□ -0.67
Nr1h4Q60641 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Sall2-201ENSMUST00000058326 5147 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Anks1b-216ENSMUST00000182430 3305 ntTSL 5 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Pum1-201ENSMUST00000030315 5389 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 AC140462.2-201ENSMUST00000225718 2433 ntBASIC10.88□□□□□ -0.67
Nr1h4Q60641 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Zcchc7-203ENSMUST00000107824 2503 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Gm45140-202ENSMUST00000204419 5061 ntAPPRIS P5 TSL 5 BASIC10.88□□□□□ -0.67
Nr1h4Q60641 Olfr370-203ENSMUST00000214156 2475 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Gm44826-201ENSMUST00000207648 2332 ntBASIC10.87□□□□□ -0.67
Nr1h4Q60641 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Pxdn-208ENSMUST00000220271 6377 ntTSL 5 BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Klhl18-205ENSMUST00000198400 4638 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 BC035947-201ENSMUST00000170511 3063 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Rtl1-201ENSMUST00000149046 6358 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Gm8343-201ENSMUST00000182705 994 ntBASIC10.87□□□□□ -0.67
Nr1h4Q60641 Gm38117-201ENSMUST00000194653 939 ntBASIC10.87□□□□□ -0.67
Nr1h4Q60641 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC10.87□□□□□ -0.67
Nr1h4Q60641 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC10.87□□□□□ -0.67
Nr1h4Q60641 AC159896.2-201ENSMUST00000214753 269 ntBASIC10.87□□□□□ -0.67
Nr1h4Q60641 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Gm19972-201ENSMUST00000218180 5664 ntBASIC10.87□□□□□ -0.67
Nr1h4Q60641 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Mirg-201ENSMUST00000181496 1906 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Il1rap-202ENSMUST00000096129 4438 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Gm29358-202ENSMUST00000187941 3227 ntBASIC10.87□□□□□ -0.67
Nr1h4Q60641 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 AI593442-201ENSMUST00000098768 5615 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nr1h4Q60641 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Oprm1-212ENSMUST00000105603 2053 ntTSL 5 BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Cox17-202ENSMUST00000120495 3690 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Gm22133-201ENSMUST00000102082 109 ntBASIC10.86□□□□□ -0.67
Nr1h4Q60641 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC10.86□□□□□ -0.67
Nr1h4Q60641 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC10.86□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 77.5 ms