Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.55□□□□□ -0.4
Lig3P97386 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lig3P97386 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Lig3P97386 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC12.54□□□□□ -0.4
Lig3P97386 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Lig3P97386 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Esr2-202ENSMUST00000101291 3362 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Lig3P97386 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Lig3P97386 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC12.54□□□□□ -0.4
Lig3P97386 Gm15595-201ENSMUST00000120840 961 ntBASIC12.54□□□□□ -0.4
Lig3P97386 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC12.54□□□□□ -0.4
Lig3P97386 Gm18159-201ENSMUST00000174516 1070 ntBASIC12.54□□□□□ -0.4
Lig3P97386 Gm23045-201ENSMUST00000175041 96 ntBASIC12.54□□□□□ -0.4
Lig3P97386 Gm9022-201ENSMUST00000182482 992 ntBASIC12.54□□□□□ -0.4
Lig3P97386 Gm28388-201ENSMUST00000186262 437 ntBASIC12.54□□□□□ -0.4
Lig3P97386 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Gm2875-201ENSMUST00000211333 360 ntBASIC12.54□□□□□ -0.4
Lig3P97386 Gm19640-201ENSMUST00000214849 464 ntBASIC12.54□□□□□ -0.4
Lig3P97386 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 CT571245.2-201ENSMUST00000218421 305 ntBASIC12.54□□□□□ -0.4
Lig3P97386 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Lig3P97386 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Nfic-201ENSMUST00000020461 3348 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Lig3P97386 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Rnf41-201ENSMUST00000096386 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC12.54□□□□□ -0.4
Lig3P97386 Gm38292-201ENSMUST00000192646 3045 ntBASIC12.54□□□□□ -0.4
Lig3P97386 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lig3P97386 Parvg-207ENSMUST00000163667 2700 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Lig3P97386 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC12.53□□□□□ -0.4
Lig3P97386 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC12.53□□□□□ -0.4
Lig3P97386 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Sema4a-201ENSMUST00000029700 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Lig3P97386 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Lig3P97386 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC12.53□□□□□ -0.4
Lig3P97386 Gm11949-201ENSMUST00000117640 372 ntBASIC12.53□□□□□ -0.4
Lig3P97386 Gm15352-201ENSMUST00000118696 270 ntBASIC12.53□□□□□ -0.4
Lig3P97386 Gm13937-201ENSMUST00000121000 988 ntBASIC12.53□□□□□ -0.4
Lig3P97386 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lig3P97386 Gm17877-201ENSMUST00000192578 814 ntBASIC12.53□□□□□ -0.4
Lig3P97386 Gm42657-201ENSMUST00000201746 211 ntBASIC12.53□□□□□ -0.4
Lig3P97386 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC12.53□□□□□ -0.4
Lig3P97386 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 CT025553.1-201ENSMUST00000226292 299 ntBASIC12.53□□□□□ -0.4
Lig3P97386 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lig3P97386 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Gm37613-201ENSMUST00000195677 3580 ntBASIC12.53□□□□□ -0.4
Lig3P97386 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lig3P97386 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lig3P97386 Gm9361-201ENSMUST00000198695 1507 ntBASIC12.52□□□□□ -0.4
Lig3P97386 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lig3P97386 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lig3P97386 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Lig3P97386 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lig3P97386 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Lig3P97386 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Lig3P97386 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lig3P97386 Pck1-201ENSMUST00000029017 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lig3P97386 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lig3P97386 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lig3P97386 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lig3P97386 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms