Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 AC122891.1-201ENSMUST00000218671 268 ntBASIC12.33□□□□□ -0.44
RaraP11416 AC133602.1-201ENSMUST00000227510 509 ntBASIC12.33□□□□□ -0.44
RaraP11416 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
RaraP11416 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Gm13135-201ENSMUST00000117628 3121 ntBASIC12.33□□□□□ -0.44
RaraP11416 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Atg10-201ENSMUST00000022119 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
RaraP11416 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
RaraP11416 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
RaraP11416 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC12.32□□□□□ -0.44
RaraP11416 Meig1-202ENSMUST00000115081 421 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
RaraP11416 Gm14724-201ENSMUST00000118400 537 ntBASIC12.32□□□□□ -0.44
RaraP11416 Gm12196-201ENSMUST00000120954 262 ntBASIC12.32□□□□□ -0.44
RaraP11416 Gm25881-201ENSMUST00000157783 103 ntBASIC12.32□□□□□ -0.44
RaraP11416 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC12.32□□□□□ -0.44
RaraP11416 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC12.32□□□□□ -0.44
RaraP11416 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC12.32□□□□□ -0.44
RaraP11416 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Gm7172-201ENSMUST00000218047 1152 ntBASIC12.32□□□□□ -0.44
RaraP11416 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
RaraP11416 AC112945.1-201ENSMUST00000226413 514 ntBASIC12.32□□□□□ -0.44
RaraP11416 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
RaraP11416 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Hnrnph2-203ENSMUST00000074950 2426 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
RaraP11416 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Ptpru-202ENSMUST00000097860 3365 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
RaraP11416 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RaraP11416 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
RaraP11416 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
RaraP11416 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC12.31□□□□□ -0.44
RaraP11416 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC12.31□□□□□ -0.44
RaraP11416 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC12.31□□□□□ -0.44
RaraP11416 Gm26868-201ENSMUST00000181927 2655 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
RaraP11416 Prkd2-202ENSMUST00000168093 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
RaraP11416 Gm12579-201ENSMUST00000118040 783 ntBASIC12.31□□□□□ -0.44
RaraP11416 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Gm12749-201ENSMUST00000122138 1159 ntBASIC12.31□□□□□ -0.44
RaraP11416 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC12.31□□□□□ -0.44
RaraP11416 Gm18734-201ENSMUST00000172937 808 ntBASIC12.31□□□□□ -0.44
RaraP11416 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
RaraP11416 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC12.31□□□□□ -0.44
RaraP11416 AC107638.1-201ENSMUST00000213690 1061 ntBASIC12.31□□□□□ -0.44
RaraP11416 Gm6722-201ENSMUST00000221586 390 ntBASIC12.31□□□□□ -0.44
RaraP11416 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
RaraP11416 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Gm28424-201ENSMUST00000187393 1319 ntBASIC12.31□□□□□ -0.44
RaraP11416 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RaraP11416 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 66.3 ms