Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm15506-201ENSMUST00000148776 1133 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 4930524O07Rik-202ENSMUST00000162334 293 ntTSL 2 BASIC13.23□□□□□ -0.29
Col1a1P11087 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Col1a1P11087 Cd9-ps-201ENSMUST00000174687 650 ntBASIC13.23□□□□□ -0.29
Col1a1P11087 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC13.23□□□□□ -0.29
Col1a1P11087 Mir6387-201ENSMUST00000184042 108 ntBASIC13.23□□□□□ -0.29
Col1a1P11087 Gm32591-203ENSMUST00000204725 696 ntTSL 3 BASIC13.23□□□□□ -0.29
Col1a1P11087 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC13.23□□□□□ -0.29
Col1a1P11087 Gm35363-201ENSMUST00000209330 1317 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Col1a1P11087 Gm15984-202ENSMUST00000156466 1534 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 AC137950.2-202ENSMUST00000227150 1635 ntBASIC13.23□□□□□ -0.29
Col1a1P11087 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Prr16-201ENSMUST00000116639 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Col1a1P11087 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Col1a1P11087 1700025C18Rik-201ENSMUST00000109304 702 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Mrps36-203ENSMUST00000109333 701 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Col1a1P11087 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Gm12947-201ENSMUST00000116114 420 ntBASIC13.23□□□□□ -0.29
Col1a1P11087 Impdh2-ps-201ENSMUST00000120826 1545 ntBASIC13.23□□□□□ -0.29
Col1a1P11087 Gm16305-201ENSMUST00000140747 556 ntBASIC13.23□□□□□ -0.29
Col1a1P11087 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Tex33-202ENSMUST00000165170 1072 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC13.23□□□□□ -0.29
Col1a1P11087 Gm29521-201ENSMUST00000187061 745 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Gm37257-201ENSMUST00000194871 717 ntTSL 5 BASIC13.23□□□□□ -0.29
Col1a1P11087 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC13.23□□□□□ -0.29
Col1a1P11087 Tbc1d24-211ENSMUST00000201583 893 ntTSL 5 BASIC13.23□□□□□ -0.29
Col1a1P11087 Gm43460-201ENSMUST00000202491 1057 ntBASIC13.23□□□□□ -0.29
Col1a1P11087 9530062K07Rik-201ENSMUST00000203332 787 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Wbp1-209ENSMUST00000205023 716 ntBASIC13.23□□□□□ -0.29
Col1a1P11087 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
Col1a1P11087 Gm31718-201ENSMUST00000212406 1646 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 AC163703.1-201ENSMUST00000214133 339 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Col1a1P11087 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Col1a1P11087 Ebi3-201ENSMUST00000003274 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Olfr963-201ENSMUST00000073433 936 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Col1a1P11087 Tex33-201ENSMUST00000074380 1147 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col1a1P11087 Taar5-201ENSMUST00000092659 1014 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Col1a1P11087 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Ptprm-203ENSMUST00000224091 3773 ntBASIC13.22□□□□□ -0.29
Col1a1P11087 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC13.22□□□□□ -0.29
Col1a1P11087 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Col1a1P11087 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC13.22□□□□□ -0.29
Col1a1P11087 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC13.22□□□□□ -0.29
Col1a1P11087 4930555A03Rik-201ENSMUST00000196052 1556 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 4930579F01Rik-202ENSMUST00000199293 1598 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Enpp7-201ENSMUST00000092373 1370 ntAPPRIS P2 TSL 2 BASIC13.22□□□□□ -0.29
Col1a1P11087 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC13.22□□□□□ -0.29
Col1a1P11087 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Sh3gl2-202ENSMUST00000107184 671 ntTSL 2 BASIC13.22□□□□□ -0.29
Col1a1P11087 Olfr29-ps1-201ENSMUST00000117959 963 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Col1a1P11087 Gm12028-201ENSMUST00000118065 436 ntBASIC13.22□□□□□ -0.29
Col1a1P11087 Gm16209-201ENSMUST00000118457 627 ntBASIC13.22□□□□□ -0.29
Col1a1P11087 Gm10171-201ENSMUST00000126220 628 ntBASIC13.22□□□□□ -0.29
Col1a1P11087 Gm15912-201ENSMUST00000128914 578 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Gm5526-201ENSMUST00000153604 423 ntBASIC13.22□□□□□ -0.29
Col1a1P11087 Tstd1-201ENSMUST00000171362 551 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Col1a1P11087 Gm4858-201ENSMUST00000179064 735 ntTSL 5 BASIC13.22□□□□□ -0.29
Col1a1P11087 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Col1a1P11087 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Col1a1P11087 Vmn1r206-201ENSMUST00000187140 1135 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Col1a1P11087 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC13.22□□□□□ -0.29
Col1a1P11087 Gm9644-201ENSMUST00000212828 1183 ntBASIC13.22□□□□□ -0.29
Col1a1P11087 AC107752.1-201ENSMUST00000219362 469 ntBASIC13.22□□□□□ -0.29
Col1a1P11087 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Col1a1P11087 Tbc1d21-201ENSMUST00000040217 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 H2-Aa-201ENSMUST00000040655 1132 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 4930553M12Rik-201ENSMUST00000057837 498 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Col1a1P11087 Gm10233-201ENSMUST00000089275 628 ntBASIC13.22□□□□□ -0.29
Col1a1P11087 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Col1a1P11087 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC13.22□□□□□ -0.29
Col1a1P11087 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col1a1P11087 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms